RetrogeneDB ID: retro_mluc_2607

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL431651:1064..4129(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028249
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000005233
• Aliases: None
• Description: None

Sequence

>retro_mluc_2607
ATGCCCAAGATAATCCTGAGTGGGGTGACCGTGGATTTCCCTTTCCAGCCATACAAATGCCAGGAGGAGTACATGGCCAA
AGTCCTGGAGTGTCTGCAGAAGAAAGTGAACGGCGTCCTGGAGAGCCCCACGGGCACAGGGAAGACCCTGTGCCTGCTCT
GCAGCACACTGGCCTGGCGGGAGCACCTCCGTGATGCCATCTCCGCCCGCAAGATTGCTGAGAGGACCCAAGGGGATCTC
TTCCTCGCTCGCCCCTTGTCTTCCTGGGGGAATGCTGCTTCAGAGGGAGACGCCACAGTTTGCTATGCGGACATCCCAAA
GATCATTTATGCCTCCAGGACCCACTCGCAACTCACACAGGTCATCGGCGAGCTTCGGAACACGTCCTACCGGCCCAGGG
TGTGTGTGCTGGGCTCCCGGGAGCAGCTGTGTATCCACCCCGAGGTGAAGAAGCAGGAGAGTAACCACATGCAGATCCAC
CTGTGCCGCAAGAAGGTGGCGAGTCGCTCCTGTCATTTCTACAACAACGTAGAAGAAAAGAGCCTGGAGCAGGACCTGGC
CACCCCCATCCTGGACATCGAGGACCTGGTGAAGAGTGGGAACAGGCACAAGCTGTGCCCATACTACCTGTCCCGGAATC
TGAAGCAGCAGGCTGACATCATCTTCATGCCCTACAACTACTTGCTGGATGCCAGGAGTCGCCGGGCACACGGCATCGAC
CTGAAGGGGACGGTGGTGATCTTCGATGAAGCTCACAATGTGGAGAAGATGTGCGAGGGGTCGGCGTCCTTTGATCTGAC
GATGTGGCCCGGCGATGTGGCCTCTGGATTGGACGTCATTGACCAGATCCTGGAGGAGCAGAGTAGGGCAGCGCAGCAGG
GGGAGCTCCGCCTGGAGTTCAGCGCAGACGCCCACTCAGGGCTGAACATGGAGCTGGAGGACATCGCGAAGCTGAAGATG
ATCCTGCTTCGCCTGGAGGGCGCCATCGATGCTGTGGAGCTGCCCGGAGGTGACGGAGGTGTCACCAAGCCGGGGAGCTA
CATCTTCGAGCTGTTTGCCGAGGCCCAGATCACACGTCAGACCAAGGGCTGCATCTTGGAGTCCCTGGACCAGATCATCC
AGCACCTGGCAGGACGCGCAGGGCTGTTCACCAACACGGCGGGACTGCAGAAGCTGGCGGACATCATCCAGATGGTGTTC
AGTACAGACCCTGCCGAGGGCAGCCCCTCAGGGGGGCCCGAAGCCTCTCAGTCCTACAAGGTACACATCCACCCTGACAC
CAGCCCCCGGGGGACAGCTCATCGGTCAGATGCTTGGAGCTCCACGGCGTCCGGAAGGCGAGGGAAGGTGCTCAGCTACT
GGCGCTTCAGCCCTGGCTGCTGCATGCGCGAGCGGGTCCGCCAGGGCGTGCGCACGCTCCTCCGCACCAGCGGCACGCTG
GCCCCGTGTCCTCCTTCGCCCTGGAGATGCAGATCCCCTTCCCAGTCTGCTTGGAGAACCCCCACGTCATTGACAAGCAC
CAGATCTGGGTGGGGATTGTCCCCAGAGGCCCTGATGGAGCCCGGCTGAGCTCCGCCTTTGACAAACGGTTCTCTGATGA
GTGCTTGTCCTCTCTGGGGAAGGCGCTAGTCAACATCACGCGCGTGGTCCCCCACGGGCTCCTGGTCTTCTTCCCCTCCT
ACCCCGTCCTGGAGAAAAGCCTGGAGTTCTGGCGGGCCCGGGACTGTGCCAGGAAGCTCGAGGCCCTGAAGCCTTTGTTT
GTGGAGCCGAGGAGCAAGGGCAGCTTCTCAGAGGTGATGGGTGCTTACTACGCAACTGTCGCCTCCCCGGGATCCCGAGG
GGCCGCCTTCCTGGCTGTGTGCCGGGGGAAGGCCAGCGAGGGGCTGGACTTCGCAGATGTGAACGGCCGAGGGGTGGTTG
TCACGGGTCTCCCGTACCCCCCACGCAAGGACCCCCGGGTCATCCTCAAGATGCGGTTCCTAGATGAGATGAAGGGTCGG
AGTGGGGCCTCGGGCCAGTTCCTTTCTGGGCAAGACTGGTACCGGCAGCAGGCGTCCAGGGCTGTGAACCAGGCCATCGG
GAGGGTCATCCGGCATGGCCACGACTATGGGGCCATCTTCCTCTGTGACCACAGGTTCACCAGTGCGGACACCAGAGCCC
AGCTGCCATCCTGGGTGCACCCCCACGTCCAAGTATACGACCACTTCGGCCACGTCATCCGAGATGTGGCCCCGTTCTTC
CGGGTGGCTCAAAAAACAATGCCGGCGCCCCTGGCTGCCACCCCAAGCCCGGGCCCGGGAGAAGGCACCGCCCCAGTGGC
TGTGTCGCTCGGGGCCCTCTCCACCAAGAAAGCCAAGAGTCTGGACCTGCACGTCGCCAGCCTGAGGCGGAGGCCTCCAG
GACTGCCAGCCTCCGGGGACGGCGGGGACACCGAGGGCAGCCTGTGTGTGGAGTACGAGCAGGAGTCGGTTCACACCCAG
CGAAGGCCTGTGGGGCTGCTGGCCGCCCTGGAGCACAGCGAGCAGCTGGCCCGAAGGCCCGGGGAGCAGGCCGGGCCTGG
GGAGGAGGCACAGTGCCGCTCCAGCACGTCCCTCCCGGGTGAGAAGAGGTCTGTGGCGGAGCAGAGAGGAGGCAGGAAGA
AGATCAGGCTGGTCAGCTGCCAGGAGGGGCTGACGGCAGGTGCGCAGGCGGACAGAGCCAAGCTCTTCATGGTGGCCGTG
AAGCAGGCGCTGAGCCGGGCCAGCTTTGCCGCCTTTACACAGGCCCTGCAGGAGTACAAGGGCTCGGACGACTTCCAGGC
TCTGGTAGACCACCTCAGCCCCCTCTTTGCCCAAGACCCCAAGAAGCACAGCCTGCTCCAAGGCTTCTACCAGTTCGTGC
GGCCCCACCACAAGCAGCAATGTGAGGAGCTCTGCCTCCAGCTGACGGGCCGAGGCTGTAGCCATCTGCCTGAGCACAGC
CTTCCGCGTGGGCAGTGGACACAGCCAGCCCCGGACCCTGGTGGAAGGAGGGAGCCTGTCCCCAAGATGACCCTGTCCCA
GAGTGCGGCCAGGCAGCTGGACAGC

Alignment

ORF - retro_mluc_2607 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.88 %
• Parental protein coverage: 83.16 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MPKIILSGVTVDFPFQPYKCQEEYMAKVLECLQKKVNGVLESPTGTGKTLCLLCSTLAWREHLRDAISAR
          MPKIILSGVTVDFPFQPYKCQEEYMAKVLECLQKKVNGVLESPTGTGKTLCLLCSTLAWREHLRDAISAR
Retrocopy MPKIILSGVTVDFPFQPYKCQEEYMAKVLECLQKKVNGVLESPTGTGKTLCLLCSTLAWREHLRDAISAR

Parental  KIAERTQGDLFLDRPLSSWGNAASEGDATACYADIPKIIYASRTHSQLTQVIGELRNTSYRPRVCVLGSR
          KIAERTQGDLFL.RPLSSWGNAASEGDAT.CYADIPKIIYASRTHSQLTQVIGELRNTSYRPRVCVLGSR
Retrocopy KIAERTQGDLFLARPLSSWGNAASEGDATVCYADIPKIIYASRTHSQLTQVIGELRNTSYRPRVCVLGSR

Parental  EQLCIHPEVKKQESNHMQIHLCRKKVASRSCHFYNNVEEKSLEQDLATPILDIEDLVKSGNRHKLCPYYL
          EQLCIHPEVKKQESNHMQIHLCRKKVASRSCHFYNNVEEKSLEQDLATPILDIEDLVKSGNRHKLCPYYL
Retrocopy EQLCIHPEVKKQESNHMQIHLCRKKVASRSCHFYNNVEEKSLEQDLATPILDIEDLVKSGNRHKLCPYYL

Parental  SRNLKQQADIIFMPYNYLLDAKSRRAQGIDLKGTVVIFDEAHNVEKMCEESASFDLT--PHDVASGLDVI
          SRNLKQQADIIFMPYNYLLDA.SRRA.GIDLKGTVVIFDEAHNVEKMCE.SASFDLT..P.DVASGLDVI
Retrocopy SRNLKQQADIIFMPYNYLLDARSRRAHGIDLKGTVVIFDEAHNVEKMCEGSASFDLTMWPGDVASGLDVI

Parental  DQILEEQSRAAQQGELRLEFSADANSGGLNMELEDIAKLKMILLRLEGAIDAVELPGGDGGVTKPGSYIF
          DQILEEQSRAAQQGELRLEFSADA.SG.LNMELEDIAKLKMILLRLEGAIDAVELPGGDGGVTKPGSYIF
Retrocopy DQILEEQSRAAQQGELRLEFSADAHSG-LNMELEDIAKLKMILLRLEGAIDAVELPGGDGGVTKPGSYIF

Parental  ELFAEAQITLQTKGCILESLDQIIQHLAGRAGLFTNTAGLQKLVDIIQMVFSTDPAEGSSSVGPEASQSY
          ELFAEAQIT.QTKGCILESLDQIIQHLAGRAGLFTNTAGLQKL.DIIQMVFSTDPAEGS.S.GPEASQSY
Retrocopy ELFAEAQITRQTKGCILESLDQIIQHLAGRAGLFTNTAGLQKLADIIQMVFSTDPAEGSPSGGPEASQSY

Parental  KVHIHPDTSHRGTAHRSDAWSSTASRRRGKVLSYWCFSPGCCMRELVRQGVRTLLLTSGTLAP-VSSFAL
          KVHIHPDTS.RGTAHRSDAWSSTAS.RRGKVLSYW.FSPGCCMRE.VRQGVRTLL.TSGTLAP.VSSFAL
Retrocopy KVHIHPDTSPRGTAHRSDAWSSTASGRRGKVLSYWRFSPGCCMRERVRQGVRTLLRTSGTLAP<VSSFAL

Parental  EMQIPFPVCLENPHVIDKHQIWVGIVPRGPDGAQLSSAFDKRFSDECLSSLGKALVNITRVVPHGLLVFF
          EMQIPFPVCLENPHVIDKHQIWVGIVPRGPDGA.LSSAFDKRFSDECLSSLGKALVNITRVVPHGLLVFF
Retrocopy EMQIPFPVCLENPHVIDKHQIWVGIVPRGPDGARLSSAFDKRFSDECLSSLGKALVNITRVVPHGLLVFF

Parental  PSYPVLEKSLEFWRARDCARKLEALKPLFVEPRSKGSFSEVMGAYYAAVASPGSRGAAFLAVCRGKASEG
          PSYPVLEKSLEFWRARDCARKLEALKPLFVEPRSKGSFSEVMGAYYA.VASPGSRGAAFLAVCRGKASEG
Retrocopy PSYPVLEKSLEFWRARDCARKLEALKPLFVEPRSKGSFSEVMGAYYATVASPGSRGAAFLAVCRGKASEG

Parental  LDFADVNGRGVVVTGLPYPPRKDPRVILKMQFLDEMKGRSGASGQFLSGQDWYRQQASRAVNQAIGRVIR
          LDFADVNGRGVVVTGLPYPPRKDPRVILKM.FLDEMKGRSGASGQFLSGQDWYRQQASRAVNQAIGRVIR
Retrocopy LDFADVNGRGVVVTGLPYPPRKDPRVILKMRFLDEMKGRSGASGQFLSGQDWYRQQASRAVNQAIGRVIR

Parental  HRHDYGAVFLCDHRFTSADTRAQLPSWVRPHVQVYDHFGHVIRDVAQFFRVAQKTMPAPLAATPSPGPGE
          H.HDYGA.FLCDHRFTSADTRAQLPSWV.PHVQVYDHFGHVIRDVA.FFRVAQKTMPAPLAATPSPGPGE
Retrocopy HGHDYGAIFLCDHRFTSADTRAQLPSWVHPHVQVYDHFGHVIRDVAPFFRVAQKTMPAPLAATPSPGPGE

Parental  GTVPVAVSLGALSTKKAKSLDLHVASLRRRPPGLPASGDGGDTEGSLCVEYEQESVHTQRRPVGLLAALE
          GT.PVAVSLGALSTKKAKSLDLHVASLRRRPPGLPASGDGGDTEGSLCVEYEQESVHTQRRPVGLLAALE
Retrocopy GTAPVAVSLGALSTKKAKSLDLHVASLRRRPPGLPASGDGGDTEGSLCVEYEQESVHTQRRPVGLLAALE

Parental  HSEQLARRPGEQAGPGEEEAQCRSSTSLPGEKRSVAEQRGGRKKIRLVSCQEGLTAGAQADRAKLFMVAV
          HSEQLARRPGEQAGPGEE.AQCRSSTSLPGEKRSVAEQRGGRKKIRLVSCQEGLTAGAQADRAKLFMVAV
Retrocopy HSEQLARRPGEQAGPGEE-AQCRSSTSLPGEKRSVAEQRGGRKKIRLVSCQEGLTAGAQADRAKLFMVAV

Parental  KQALSRASFAAFTQALQEYKGSDDFQALVDHLSPLFAQDPKKHSLLQGFYQFVRPHHKQRFEELCLQLTG
          KQALSRASFAAFTQALQEYKGSDDFQALVDHLSPLFAQDPKKHSLLQGFYQFVRPHHKQ..EELCLQLTG
Retrocopy KQALSRASFAAFTQALQEYKGSDDFQALVDHLSPLFAQDPKKHSLLQGFYQFVRPHHKQQCEELCLQLTG

Parental  RGCSHLPEHSLPRGQWTQPAPDPGGRREPVPKMTLSQSAARQLDT
          RGCSHLPEHSLPRGQWTQPAPDPGGRREPVPKMTLSQSAARQLD.
Retrocopy RGCSHLPEHSLPRGQWTQPAPDPGGRREPVPKMTLSQSAARQLDS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2607 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000004784	1 retrocopy	retro_ggor_2058,
Myotis lucifugus	ENSMLUG00000005233	1 retrocopy	retro_mluc_2607 ,