RetrogeneDB ID: retro_mluc_261

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429774:5727501..5728020(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000003971
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000011039
• Aliases: None
• Description: None

Sequence

>retro_mluc_261
ATGTACTACCACATCTCCTTGGAGCACGAGATCCTGCTGCACCCGCGCTACTTCGGCCCCAACCTGCTCAACACGGTGAA
GCAGAAGCTCTTCACCGAGGTGGAGGGCACCTGCACCGGCAAGTATGGCTTTGTCATTGCTGTCACCACCATCGACAATA
TTGGGGCTGGTGTGATCCAGCCAGGCAGGGGCTTTGTCCTTTACCCAGTTAAGTACAAGGCCATTGTTTTCCGGCCCTTT
AAAGGGGAAGTTGTGGATGCTGTCGTCACTCAGGTCAACAAGGTTGGACTCTTCACAGAAATTGGACCCATGTCCTGCTT
CATCTCCCGACATTCCATCCCGTCCGAGATGGAGTTTGATCCTAACTCCAACCCACCGTGTTACAAGACAGTGGATGAGG
ACATTGTGATTCAGCAGGACGATGAGATCCGCTTGAAGATTGTGGGGACCCGTGTGGATAAGAACGACATTTTTGCGATC
GGCTCTTTGATGGATGATTACTTGGGGCTTTTGAGCTGA

Alignment

ORF - retro_mluc_261 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.84 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPV
          M.YHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPV
Retrocopy MYYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPV

Parental  KYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDIVIQQD
          KYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDIVIQQD
Retrocopy KYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDIVIQQD

Parental  DEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS
          DEIRLKIVGTRVDKNDIFAIGSLMDDYLGL.S
Retrocopy DEIRLKIVGTRVDKNDIFAIGSLMDDYLGLLS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_261 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000018688	1 retrocopy	retro_cjac_641,
Dipodomys ordii	ENSDORG00000015696	1 retrocopy	retro_dord_574,
Macropus eugenii	ENSMEUG00000011547	1 retrocopy	retro_meug_139,
Myotis lucifugus	ENSMLUG00000011039	1 retrocopy	retro_mluc_261 ,
Pteropus vampyrus	ENSPVAG00000003481	1 retrocopy	retro_pvam_91,