RetrogeneDB ID: retro_mluc_2612

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL431858:22077..23040(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: YARS2
• Ensembl ID: ENSMLUG00000001614
• Aliases: None
• Description: None

Sequence

>retro_mluc_2612
GAGCTCTTCTCCAATGGGCGGGCCTGGGGCAGCTTCACGGTGCTGGACAACTCGGCCTGGTACCAGGAGCAGCACCTGGT
GGACTTCCTGGCGGCGGTGGGCGGCCACTTCCGCATGGGCACGCTGCTGAGCCGGCTGAGCGTCCAGACCCGGCTCAAGA
GCCCCGAGGGCATGAGCTTGGCCGAGTTCCTGTACCAGGTGCTCCAGGCCTACGATTTCTACTACTTGTTTCAGCGTTAC
GGATGCCGGGTGCAGCTGGGCGGATCTGATCAGCTGGGCAATATCACGTCGGGATACGAGTTCATCAACAAGTTGACTGG
AGAAGACGTATTTGGAATCACTCTTCCTCTGATTACAAGTACAACTGGAGCAAAACTGGGAAAGTCTGCTGGCAATGCTG
TGTGGCTGAGCAGGGATAAGACATCTCCATTTGAACTGTATCAGTTCTTTGTCAGGCAGCCAGATGATGCGGTAGAAAGG
TACCTGAGACTCTTCACTTTTCTGCCCCTTCCAGAGATTGACCACATAATGCAGCTGCACGTCAAAGAGCCAGAAAAGCG
GGGTCCTCAGAAACGACTTGCTGCAGAAGTCACGAAGCTGGTTCATGGGCAAGAAGGGCTGGATTCTGCTAAAAGGTGTA
CACAAGCCCTTTATCACAGTAGCGTAGATGCACTGGAGGTCATGTCTGATGAAGAGTTAAAAGAGTTGTTTAAAGAAGCT
TCATTTTCTGAATTAGTTCTTGACCCTGGAACAAGCGTCCTAGATACGTGCCGCAAAGCAAATGCCATTCCAGATGGTCC
CCGGGGGTATCGGATGATAACAGAAGGCGGAGTCAGTATAAATCACAGACAAGTAACAAATCCAGAGAGTGTTTTGGTTG
TTGGACAACATATTCTTAAGAATGGACTTTCATTACTTAAAATAGGAAAAAGGAATTTCTACATTATAAAATGGCTTCAA
CTA

Alignment

ORF - retro_mluc_2612 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.69 %
• Parental protein coverage: 67.15 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QLFSNGRAWGSFTVLDNSAWYQEQHLVDFLAAVGGHFRMGTLLSRLSVQTRLKSPEGMSLAEFLYQVLQA
          .LFSNGRAWGSFTVLDNSAWYQEQHLVDFLAAVGGHFRMGTLLSRLSVQTRLKSPEGMSLAEFLYQVLQA
Retrocopy ELFSNGRAWGSFTVLDNSAWYQEQHLVDFLAAVGGHFRMGTLLSRLSVQTRLKSPEGMSLAEFLYQVLQA

Parental  YDFYYLFQRYGCRVQLGGSDQLGNITSGYEFINKLTGEDVFGITLPLITSTTGAKLGKSAGNAVWLSRDK
          YDFYYLFQRYGCRVQLGGSDQLGNITSGYEFINKLTGEDVFGITLPLITSTTGAKLGKSAGNAVWLSRDK
Retrocopy YDFYYLFQRYGCRVQLGGSDQLGNITSGYEFINKLTGEDVFGITLPLITSTTGAKLGKSAGNAVWLSRDK

Parental  TSPFELYQFFVRQPDDAVERYLRLFTFLPLPEIDHIMQLHVKEPEKRGPQKRLAAEVTKLVHGQEGLDSA
          TSPFELYQFFVRQPDDAVERYLRLFTFLPLPEIDHIMQLHVKEPEKRGPQKRLAAEVTKLVHGQEGLDSA
Retrocopy TSPFELYQFFVRQPDDAVERYLRLFTFLPLPEIDHIMQLHVKEPEKRGPQKRLAAEVTKLVHGQEGLDSA

Parental  KRCTQALYHSSVDALEVMSDEELKELFKEASFSELVLDPGTSVLDTCRKANAIPDGPRGYRMITEGGVSI
          KRCTQALYHSSVDALEVMSDEELKELFKEASFSELVLDPGTSVLDTCRKANAIPDGPRGYRMITEGGVSI
Retrocopy KRCTQALYHSSVDALEVMSDEELKELFKEASFSELVLDPGTSVLDTCRKANAIPDGPRGYRMITEGGVSI

Parental  NHRQVTNPESVLVVGQHILKNGLSLLKIGKRNFYIIKWLQL
          NHRQVTNPESVLVVGQHILKNGLSLLKIGKRNFYIIKWLQL
Retrocopy NHRQVTNPESVLVVGQHILKNGLSLLKIGKRNFYIIKWLQL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2612 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000011140	1 retrocopy	retro_ecab_980,
Myotis lucifugus	ENSMLUG00000001614	1 retrocopy	retro_mluc_2612 ,