RetrogeneDB ID: retro_mluc_2624

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL432240:818..1983(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000015114
• Aliases: None
• Description: None

Sequence

>retro_mluc_2624
AGCATCTTTATCCCAGGAACTCAGAGAGGACTGTGGAAACTCAGACCAGACCTTTTGATTTTATTTTTCTCCAGCCATAC
GCCCTGTGGGGATGCCTCCATCAGCCCAATGCTCGAGTTTGAAGATCGGCCTTGCTATCCTGTCAGTAGAGATTGGGCCC
ATAACCCATCAATGGAAGCCAGTGGTAACCTGGAAGCTACTGAAGATGAAAGGAAATGTGAAGACTCAGACAGTCCCGTG
ACCAAAAAAATGAGGCTTGAGCCCGGAACTCCTGACAGAAAAGTCACCAACGGTATGGCTCACCATCAGAATTTTGCCAA
TCAGGGAAGTGGCCCAGTCCCAGCAAATGTCAGCAGCTCTAATGTCACCTCAGAGGAACTGGCCACTGTCACTGGGATGG
CCCCCAGTGGTGCCAAAGTGGTGGATGTTTATAGGACAGGAGCCAAGTGAGTATCTGGCGAAGGTGGAGACTCAGGGAAG
CCTGGTGTTGCATATGACGGGGTAGGGCTGCTCCGAGTGAAGCCAGGCGGGGAGACAGGACTTGCTCCACGTCCTGCAGC
AACAAGTTGGCACGGTGGAATGTCCTCGGATGCCAGGGGTCACTGTTGATGCACTTTCTAGAAGAGCCTGTTTACCTGTC
TGCTGTGGTCATTGGGAAGTGCCCATATAGCCAGGAAGCCATGCAGAGAGCACTAGTTAGGAGGTGTCAGAATGTCTCCT
CTTTACCCAAAGGCTTTGGAGTTCAAGAAGTAAAAATACAGCAGTCGGATTGACTCTTTGAGCAGAGCCGCTGTGCAGTG
CAGGCAAAAAGGGCTGACAGTCCAGGGCCACCTGTTCCTTGTGGAGCAGCCATCAGCTGGAGTGCAGTTCCCGAGCAGCC
ATTGGATGTTTCTGCCAATGGCTTTCCGCAGGGAACAACAAAGAAGGGAATCAGAAGCCTTCAGGCCAGATCTCGAATCA
GCAAAGTGGAACTCTTTAGATCATTCCAGGAGCCGCTAAGTAGTATTTCAGAGGACAAGTGGCCAGACTCCCTCAGGGTG
CGGAAGCTAGAAACAGACCAGGAGTACGAGGAGGCTGCATCTGCTTACCAGGAAGCCTGGAGTGCACTCCGGAAGCAGGC
ATTTGGATCCTGGATCAGAAACCCCCCGATTACCACCAGTTTAAA

Alignment

ORF - retro_mluc_2624 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.56 %
• Parental protein coverage: 77.49 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SIFIPGAQRGLWKLRPDLSFLFFSSHTPCGDASIIPMLEFEDQPCYPVSRDWAHNPSMEASGNLEATEDK
          SIFIPG.QRGLWKLRPDL..LFFSSHTPCGDASI.PMLEFED.PCYPVSRDWAHNPSMEASGNLEATED.
Retrocopy SIFIPGTQRGLWKLRPDLLILFFSSHTPCGDASISPMLEFEDRPCYPVSRDWAHNPSMEASGNLEATEDE

Parental  RKCEDPDSPMTKKMRLEPGTPDRKVTNGVAHHQSFGNQGSGPVPPNVSCSNVTSEELATVTGMAPSGAKV
          RKCED.DSP.TKKMRLEPGTPDRKVTNG.AHHQ.F.NQGSGPVP.NVS.SNVTSEELATVTGMAPSGAKV
Retrocopy RKCEDSDSPVTKKMRLEPGTPDRKVTNGMAHHQNFANQGSGPVPANVSSSNVTSEELATVTGMAPSGAKV

Parental  VDVYRTGAKCVPGEVGDSGKPGAAYHRVGLLRVKPG-RGDRTCSMSCSDKLARWNVLGCQGSLLMHFLEE
          VDVYRTGAK.V.GE.GDSGKPG.AY..VGLLRVKPG.RGDRTCS.SCS.KLARWNVLGCQGSLLMHFLEE
Retrocopy VDVYRTGAK*VSGEGGDSGKPGVAYDGVGLLRVKPG<RGDRTCSTSCSNKLARWNVLGCQGSLLMHFLEE

Parental  PVYLSAVVIGKCPYSQEAMQRALIRRCQNVSSLPKGFGVQEVKIQQSDLLFEQSRCAVQAKRADCPGRLV
          PVYLSAVVIGKCPYSQEAMQRAL.RRCQNVSSLPKGFGVQEVKIQQSD.LFEQSRCAVQAKRAD.PG..V
Retrocopy PVYLSAVVIGKCPYSQEAMQRALVRRCQNVSSLPKGFGVQEVKIQQSD*LFEQSRCAVQAKRADSPGPPV

Parental  PCGAAISWSAVPEQPLDVTANGFPQGTTKKGIRSLQARSRISKVELFRSFQELLSSISEDKWPDSLRVWK
          PCGAAISWSAVPEQPLDV.ANGFPQGTTKKGIRSLQARSRISKVELFRSFQE.LSSISEDKWPDSLRV.K
Retrocopy PCGAAISWSAVPEQPLDVSANGFPQGTTKKGIRSLQARSRISKVELFRSFQEPLSSISEDKWPDSLRVRK

Parental  LETYQEYKEAASAYQEAWSALRKQAFGSWIRN-PPDYHQFK
          LET.QEY.EAASAYQEAWSALRKQAFGSWIRN.PPDYHQFK
Retrocopy LETDQEYEEAASAYQEAWSALRKQAFGSWIRN<PPDYHQFK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2624 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000015114	1 retrocopy	retro_mluc_2624 ,