RetrogeneDB ID: retro_mluc_2631

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL432398:0..1108(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RPS6KB2
• Ensembl ID: ENSMLUG00000005128
• Aliases: None
• Description: None

Sequence

>retro_mluc_2631
CACACACAGGCTGAACGGCGCATTCTGGGGTCGGTGAAGCACCCCTTCATTGTGGAGCTGGCCTATGCCTTCCAGACCAG
GGGCAAACTGTACCTCGTCCTCGAGTGCCTCAGTGGCGGCGATCTCTTCACACACTTGCAGCGAAAGGGCATCTTGCTGG
AAGACACGGCCTGTTTCTACCTGGCAGAGATCACACTGGCCCTGGGCCACCTCCACTCCCAAGGCATCGTCTACCGGGAC
CTCAAACCCGAGAACATCATGCTGGACAGCCAGGGCCACATCAAACTGACGGACTTCGGATTCTGCAAGGAGTCCATTCA
CCAGGGTGCTGTCACCCACACCTTCTGTGGCACCACTGAGTACATGGCCCCTGAGATTGTGGTGCGGCGCGGCCACAACC
GGGCGGTGGACTGGTGGAGCCTGGGCGTCCTCATGTACGAGATGCTCACTGGCTCGCCACCCTTCACTGCAGAGAATCGG
AAGAAAACCATGGACAAGATCATCAAAGGGAAGCTGAGGCTGCCCCTTTACCTCACCCCGGATGCCCGGGACCTCGTCAA
AAAGTTTCTGAAGCGGAATCCCCGCCGAAGGATCGGGGGTGGCCCAGGGGACGCTGCTGACGTACAGAGGCACCCCTTTT
TCCGGCACATTCATTGGGATGATCTCCTGGCCCGCCGCGTGGACCCCCCTTACAGGCCCTGTCTGCAATCAGAAGAGGAC
GTGAGCCAGTTTGCCACCTGCTTCACGCGCCAGGCACCAGTGGACAGTCCGGATGACATGGCCCTCAGTGAGAGCGCCAA
CCAGGCCTTCCTGGGCTTCACGTATGAGGCGCCCTCCGTCCTGCACAGCCTCAAGGAGGGCTTCTCCTTCTAGCCCGAGC
TGTCCTCCCCCAGGCGCCTCACCAGCAGCCCCCTGAAGTTCTCACCCTTTGAGGGGTTCCGGCCCAGTCCCGGCCCAGCA
GAGCCCATGGAGCCCCCTCTATGTCCTCTCCTGCCAGCACCCCTGGCACCACCGCCACCACCACCCTCGAGCAATGTCCC
CCTCCCCATCCGACCCCCCCCCCCCTGGGAAAAAGAAGTCCAAGAGGGGCCATGGGCACCCTGGGCAC

Alignment

ORF - retro_mluc_2631 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.41 %
• Parental protein coverage: 76.18 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  HTRAERNILESVKHPFIVELAYAFQTGGKLYLILECLSGGELFTHLEREGIFLEDTACFYLAEITLALGH
          HT.AER.IL.SVKHPFIVELAYAFQT.GKLYL.LECLSGG.LFTHL.R.GI.LEDTACFYLAEITLALGH
Retrocopy HTQAERRILGSVKHPFIVELAYAFQTRGKLYLVLECLSGGDLFTHLQRKGILLEDTACFYLAEITLALGH

Parental  HLHSHGIIYRDLKPENIMLSSQGHIKLTDFGLCKESIHEGVVTHTFCGTIEYMAPEILVRSGHNRAVDWW
          .LHS.GI.YRDLKPENIML.SQGHIKLTDFG.CKESIH.G.VTHTFCGT.EYMAPEI.VR.GHNRAVDWW
Retrocopy -LHSQGIVYRDLKPENIMLDSQGHIKLTDFGFCKESIHQGAVTHTFCGTTEYMAPEIVVRRGHNRAVDWW

Parental  SLGALMYDMLTGSPPFTAENRKKTMDKIIKGKLTLPPYLTPDARDLVKKFLKRNPSQRIGGGPGDAADVQ
          SLG.LMY.MLTGSPPFTAENRKKTMDKIIKGKL.LP.YLTPDARDLVKKFLKRNP..RIGGGPGDAADVQ
Retrocopy SLGVLMYEMLTGSPPFTAENRKKTMDKIIKGKLRLPLYLTPDARDLVKKFLKRNPRRRIGGGPGDAADVQ

Parental  RHPFFRHINWDDLLARRVDPPFRPCLQSEEDVSQFDTHFTRQTPVDSPDDTALSESANQAFLGFTYVAPS
          RHPFFRHI.WDDLLARRVDPP.RPCLQSEEDVSQF.T.FTRQ.PVDSPDD.ALSESANQAFLGFTY.APS
Retrocopy RHPFFRHIHWDDLLARRVDPPYRPCLQSEEDVSQFATCFTRQAPVDSPDDMALSESANQAFLGFTYEAPS

Parental  VLDSIKEGFSFQPKRRSPRRLNSSPRTPISPLK-FSPFEGFRPSPGPPEPMEPPLPPLLPAPPPPPSSTV
          VL.S.KEGFSF.P...SPRRL.SSP....SP...F.P..G..P......P..P.LP..L..PPPPPSS.V
Retrocopy VLHSLKEGFSF*PELSSPRRLTSSP-LKFSPFEGFRPSPG--PAEPMEPPLCPLLPAPLAPPPPPPSSNV

Parental  PLPIRPPSG-KKKSKRG-RGHPGH
          PLPIR......K....G..GHPGH
Retrocopy PLPIRXXXXWEKEVQEG>HGHPGH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2631 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000005128	2 retrocopies	retro_mluc_2631 , retro_mluc_430,