RetrogeneDB ID: retro_mluc_315

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429875:4082696..4083839(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028961
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000016858
• Aliases: None
• Description: None

Sequence

>retro_mluc_315
ATGAAGCAGCTGAGCTTGGCCAACACCCGGTTCGCCGTGGACCCCTTCCGCACACTGAAGGACAACAACCCCTCTGGGAA
CATCTTCATCTCCCCCATGAGCATTTCCTCAGCGCTGGCCATGGTCTTTCTGGGGGCCAGAGGCACTACCGAGGCCCAGA
TGTCCAAGACTCTTCACTTCGATGCTGTTAAGGAGATTCATTCAAGTTTTCAGAGTCTGAATGCTGATATCAACAAGCGT
GGAGCTCCCTATATTCTCAAACTTGCTAATAGGTTATATGGAGAGAAAACCTATGAGTTCCTCCCTGAGTTCTTAGCTTC
AACCCAGAAAATGTATGGTGCTGAACTGGCCAGTGTAGATTTTCAGCGAGCCTCTGAAGATGCAAGAAAGGTGATAAACG
CGTGGGTCAAAGGGCAGACTGAAGGGGAAATTCCAGAATTGTTGGCTGCAGGCGTGGTTGATAATATGACCAAACTTGTG
CTAGTTAATGCCATCTATTTCAAAGGAAACTGGCAGGAGACATTCAGTAAAAAGGCCACAACTGATACACCGTTCAGATT
GAATAAGAAAGACACAAAAACAGTGAAAATGATGTATCAGAAGAGCAAATTTCCATTTGGCTACATCAAGGACCTTAAGT
GCTGGGTGCTGGAACTGCCTTACCAAGGCAGGGACCTCAGCATGGTCATCCTGCTGCCAGATGACATCGAGGACGAGGCC
ACGGGTCTGAAGAAAATTGAAGAACAATTGACCCTGGAAAAACTGCATGAGTGGCCCAAACCTGAGAATCTGAGTTCCAT
TAAAGTCGACGTCCACCTGCCCAGGTTCAAGCTGGAAGAGAGCTACAACCTCAACTCTCACCTGGCCGGCCTGGGTATAG
AGGATCTCTTTAATAGCAAGGCTGATCTGTCTGGCATGGCAAGAGCCAGAGATCTTTTTATATCAAAAATTATCCACAAG
TCTTTTGTGGAAGTTAATGAGGAAGGCACAGAGGCAGCGGCTGCCACAGCCGGAATTTTAGTGGTGGGTTGTGCGCTTAT
GCCAGAAACTGAAAATTTTGTGGCCAACCATCCATTCATTTTTTTCATTCGACACAATCCCTCAACTAACATTCTGTTCT
TAGGCAGACTTTCTTCCCCTTAG

Alignment

ORF - retro_mluc_315 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.95 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEPLSLANTRFAVDLFRTLKDNNPSGNIFISPMSISSALAMVFLGARGTTEAQMSKTLHFDAVKEIHSSF
          M..LSLANTRFAVD.FRTLKDNNPSGNIFISPMSISSALAMVFLGARGTTEAQMSKTLHFDAVKEIHSSF
Retrocopy MKQLSLANTRFAVDPFRTLKDNNPSGNIFISPMSISSALAMVFLGARGTTEAQMSKTLHFDAVKEIHSSF

Parental  QSLNADINKRGAPYILKLANRLYGEKTYEFLPEFLASTQKMYGAELASVDFQRASEDARKVINEWVKGQT
          QSLNADINKRGAPYILKLANRLYGEKTYEFLPEFLASTQKMYGAELASVDFQRASEDARKVIN.WVKGQT
Retrocopy QSLNADINKRGAPYILKLANRLYGEKTYEFLPEFLASTQKMYGAELASVDFQRASEDARKVINAWVKGQT

Parental  EGKIPELLAAGMVDNRTKLVLVNAIYFNGHWEETFSKEATTDTPFRLNKKDTKTVKMMYQTNTFPFGYIE
          EG.IPELLAAG.VDN.TKLVLVNAIYF.G.W.ETFSK.ATTDTPFRLNKKDTKTVKMMYQ...FPFGYI.
Retrocopy EGEIPELLAAGVVDNMTKLVLVNAIYFKGNWQETFSKKATTDTPFRLNKKDTKTVKMMYQKSKFPFGYIK

Parental  DLKCRVLELPYQGWDLSMVILLPDDIEDEATGLKKIEEQLTLEKLHEWTKPENLHSIQVKVHLPRFKLKE
          DLKC.VLELPYQG.DLSMVILLPDDIEDEATGLKKIEEQLTLEKLHEW.KPENL.SI.V.VHLPRFKL.E
Retrocopy DLKCWVLELPYQGRDLSMVILLPDDIEDEATGLKKIEEQLTLEKLHEWPKPENLSSIKVDVHLPRFKLEE

Parental  SYNLNSHLKFLGIEDLFDSTADLSGMSRARDLCLSEIIHKSFVEVNEEGTEAAAATEEEIRMICARMPKA
          SYNLNSHL..LGIEDLF.S.ADLSGM.RARDL..S.IIHKSFVEVNEEGTEAAAAT.......CA.MP..
Retrocopy SYNLNSHLAGLGIEDLFNSKADLSGMARARDLFISKIIHKSFVEVNEEGTEAAAATAGILVVGCALMPET

Parental  ENFVADHPFIFFIRHNPSTNILFLGRLSFP
          ENFVA.HPFIFFIRHNPSTNILFLGRLS.P
Retrocopy ENFVANHPFIFFIRHNPSTNILFLGRLSSP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_315 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000008803	1 retrocopy	retro_mluc_1610,
Myotis lucifugus	ENSMLUG00000016858	1 retrocopy	retro_mluc_315 ,
Otolemur garnettii	ENSOGAG00000009416	1 retrocopy	retro_ogar_323,
Rattus norvegicus	ENSRNOG00000016581	1 retrocopy	retro_rnor_1895,