RetrogeneDB ID: retro_mluc_339

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL431162:16445..17351(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000006201
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000016233
• Aliases: None
• Description: Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:G1PU48]

Sequence

>retro_mluc_339
ATGGCCACTACCAAGCGTGTGCTGTACGTGGGTGGACTTGCAGAGGAGGTGGATGACAAAGTTCTTCATGCAGCTTTTAT
TCCTTTTGGAGATATCACAGATATTCAGATTCCTCTGGATTATGAAAGAGAAAAGCACCGAGGATTTGCTTTTGTTGAAT
TTGAGTTGGCAGAGGATGCTGCTGCAGCCATCGACAACATGAATGAATCTGAACTCTTTGGACGGACGATTCGCGTCAAT
TTGGCCAAACCAATGAGGATTAAGGAAGGCTCTTCCAGACCAGTTTGGTCAGATGATGACTGGTTGAAGAAGTTCTCTGG
GAAGACTCTGGAAGAGAATAAAGAGGAGGAGGGGTCGGAGCCCCCCAAAGCAGAAGCACAGGAGGGAGAGCCCACTGCCA
AAAAGGCCCGGTCGAACCCTCAGGTGTACATGGACATCAAGATTGGGAACAAGCCAGCCGGCCGCATCCAGATACTCCTG
CGCTCAGACGTCGTTCCCATGACGGCAGAGAATTTCCGTTGCCTGTGCACCCACGAGAAGGGCTTTGGCTTCAAGGGGAG
CAGCTTCCACCGCATCATCCCCCAGTTCATGTGCCAGGGCGGCGATTTCACCAACCACAACGGCACCGGGGGCAAGTCCA
TCTACGGGAGGAAGTTCGATGATGAGAACTTCATCCTCAAGCACACGGGACCGGGCCTGCTCTCCATGGCCAACTCCGGC
CCAAACACCAACGGCTCCCAGTTCTTCCTGACGTGTGACAAGACGGACTGGCTGGATGGCAAGCACGTGGTGTTCGGGGA
GGTCACGGAAGGCCTGGATGTCTTGCGGCAGATCGAGGCGCAGGGCAGCAAGGATGGGAAGCCAAAGGAGAAGGTGATCA
TCTCCGACTGTGGGGAGTACTTGTGA

Alignment

ORF - retro_mluc_339 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.57 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES
          MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE.EKHRGFAFVEFELAEDAAAAIDNMNES
Retrocopy MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYEREKHRGFAFVEFELAEDAAAAIDNMNES

Parental  ELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSEPPKAEAQEGEPTAKKARSNP
          ELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSEPPKAEAQEGEPTAKKARSNP
Retrocopy ELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSEPPKAEAQEGEPTAKKARSNP

Parental  QVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTG
          QVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTG
Retrocopy QVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTG

Parental  GKSIYGRKFDDENFILKHTGPG
          GKSIYGRKFDDENFILKHTGPG
Retrocopy GKSIYGRKFDDENFILKHTGPG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_339 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000007365	1 retrocopy	retro_cpor_560,
Myotis lucifugus	ENSMLUG00000016233	1 retrocopy	retro_mluc_339 ,
Tursiops truncatus	ENSTTRG00000014385	1 retrocopy	retro_ttru_1314,
Vicugna pacos	ENSVPAG00000010049	2 retrocopies	retro_vpac_261, retro_vpac_86,
Xenopus tropicalis	ENSXETG00000018981	1 retrocopy	retro_xtro_20,