RetrogeneDB ID: retro_mluc_352

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429781:10747898..10750175(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028418
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000009234
• Aliases: None
• Description: None

Sequence

>retro_mluc_352
ATGAGCAGCAAGAACTTGGATGAGAAAGATGACTTTGATGAGCAGTTGCGAATGCAGAAGTTGTATGGAGACACTGAGGA
TGGAGATACTCAGAAAGATCCCAGTAGAGAAACCAATTCTTTCAGGCAGCAGCCAGATGACACCCCCTACGAGTGGGACC
TGGATAAGAAAGCTTGGTTCCCCAAGATCACTGAAGATTTCATTGCTACATATCAGGCCAATTATGGCTTTCCTAATGAT
GGTGTGTCTAGCTCTACTGCAAATGTTCAAGATGTTAGTAGTAGGCTTGCGGAGGAAACTCCTGAAAGAAAAACCTCTGA
ACCCAGTGATCCCAAAAATAGGGGAGAAAAGAGAAAGGCTGAATTAGGATGGTTTCATGTTGAAGAAGACAGAAATACAA
ATGTATATGTGTCTGGCTTGCCTTCAGACATTACACTGGATGAATTTATACAGCTCATGTCCAAGTTTGGCATTATTATG
AGAGATCCTCAAACAGAAGAATTTAAGGTCAAGCTTTACAAAGATAATCAAGGAAATCTTAAAGGAGATGGGCTTTGCTG
TTATTTGAAGAGGGAATCTGTGGATCTTGCATTAAAACTTTTGGATGAAGATGAAATTAGAGGCCACAAATTACATGTCG
AGGTGGCAAGGTTTCAACTGAAGGGGGAATATGATGCCTCTAAGAAGAAGAAGAAGTGCAAGGACTACAAGAAAAAGCTG
TCTCTGCAACAAAAGCAGTTGGATTGGAGACCTGAGAGAAGGGATGGGCCCTCCCGAATGCGCCACGAGCGAGTTGTCAT
CATCAAAAATATGTTTCATCCCATGGATTTTGAGGATGATCCATTGGTGCTGAATGAGATCAGAGAAGATCTTCGAGTAG
AGTGTTCAAAGTTTGGACAAATTAGGAAGCTCCTTCTGTTTGATAGACACCCAGGTGGTGTGGCCTCTGTGTCCTTCAGG
GATCCAGAGGAAGCTGATTATTGTATTCAGACCCTTAATGGACGGTGGTTTGGTGGCCGTCAAATCACTGCCCAAGTGTG
GGATGGAACTACAGATTACCAGGTGGAGGAGACCGCAAAAGAAAGGGAGGAAAGGTTGAAGGGATGGGAGGCTTTCCTCA
ATGCTCCTGAGGCCAATAAAGGTCTTGGCTGTTCAAATTCCATCTGTGCTTCAGAAAGGGCAGGGCCTTCTAGAGGAAGG
CATTTTTCAGAGCACCCTAGCTCATCTAAAATGAAGGCTCAAGAAGCTGCAACTCAAATGGAATCTGAAGAACCTATAGA
TGAAAAGTTTGAAAAAACAAAGGATGGGGGAGAATTCGAAGATGCTAAAGAAAGTGACCTCAAACGAGAGGCTGAAGAAT
GCTACCCCCCAAAAGAATCTGAAAGAAGGTATGAGGAAGGCTGCCCCCAAAGATATCATAGAGACTACCTTGAAAAAGAG
TCTGGAGAAGGTAGTCCCAAAAAAGAGTTGGAAGAGGTTAGTCCTAAAAGAGGTGCTAAAGTGAATGACCCTGGAAGAGA
ATCCAAAAAGCGACTGAGAAATGATTTTGAAGAGAATGGCTTTGAAAAGGAGTCTAAAGATGGCCCCAACAAGGAGTCTG
AAGAAGAGAATGGCCCCCAAAAGGAGTTTGAAGAAAATGAGTTGGAAAGAGAATCTGAAGAAGACTGCTCTGAAAAGCTG
TTTGAAGATGGCCCTGAAAAAGAATTAGAAGAAAATGGCCCCCAAAAAGAGTTTGATGAGAATGGCTCCGACAAGGAGTT
TAATGAAAATGTGCTCGAACAAGAGTCAGAAGAAAATGACTCTGAAAAATCAGAATTTGAAGATGACAACTCTGAAAAAG
TGTTTGATGAGGAAGGCTCTGAGACAGACTTTTACGAAGAATCAGATGAAATGGAAGGAGAAGGAGATACATATGAAAAA
GTTTTTGATGAGGAGTCTGATGAAAAAGAGGACGAAGAAGATGCAGATGAAAAGGGGCATGAAGATGCTGATGAAAAGGA
GGAAGGAGATGATGCAGATGAAAAGATGTTTGAATATTCAGATGAAAAAGAAGACGAAGTGGATGCAAAGGAGAATGAAG
AAGGTATAGATGAAAACATGTTCGAAGATGGTGATGCCAACGAGAAGTTGTTTGTAGAGGATTCCTGTGGGAAGTTGTTC
GATGATTCTGATGAGAACGGGACGGTGGGTGGTTTGGGGCATGTTCAGGAAGAAGGGGCCCTGTCCACAGGCAGCAGCTT
TATCCTCAGTGATGATGATGATGATGATGATGATGAT

Alignment

ORF - retro_mluc_352 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.71 %
• Parental protein coverage: 69.11 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSHNNLEGKDDFEEQLRLQKLYGDTHDGDTQKGPGRENNSFGQQPDDTPYEWDLDKKAWFPKITEDFIAT
          MS..NL..KDDF.EQLR.QKLYGDT.DGDTQK.P.RE.NSF.QQPDDTPYEWDLDKKAWFPKITEDFIAT
Retrocopy MSSKNLDEKDDFDEQLRMQKLYGDTEDGDTQKDPSRETNSFRQQPDDTPYEWDLDKKAWFPKITEDFIAT

Parental  YQANYGFSNDGASSSTANVQDVNARPAEEPPQRKNPEPTDPKKRGEKRKAESGWFHVEEDRNTNVYVSGL
          YQANYGF.NDG.SSSTANVQDV..R.AEE.P.RK..EP.DPK.RGEKRKAE.GWFHVEEDRNTNVYVSGL
Retrocopy YQANYGFPNDGVSSSTANVQDVSSRLAEETPERKTSEPSDPKNRGEKRKAELGWFHVEEDRNTNVYVSGL

Parental  PPDITLDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQGNLKGDGLCCYLKRESVDLALKLLDEDEIRGYR
          P.DITLDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQGNLKGDGLCCYLKRESVDLALKLLDEDEIRG..
Retrocopy PSDITLDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQGNLKGDGLCCYLKRESVDLALKLLDEDEIRGHK

Parental  LHVEVAKFQLKGEYDASKKKKKCRDYKKKLSQQQKQLDWRPERKDGSIRMRHERVVIIKNMFHPMDFEDD
          LHVEVA.FQLKGEYDASKKKKKC.DYKKKLS.QQKQLDWRPER.DG..RMRHERVVIIKNMFHPMDFEDD
Retrocopy LHVEVARFQLKGEYDASKKKKKCKDYKKKLSLQQKQLDWRPERRDGPSRMRHERVVIIKNMFHPMDFEDD

Parental  PLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFREPEEADYCIQTLDGRWFGGRQITAQVWDGT
          PLVLNEIREDLRVECSKFGQIRKLLLFDRHP.GVASVSFR.PEEADYCIQTL.GRWFGGRQITAQVWDGT
Retrocopy PLVLNEIREDLRVECSKFGQIRKLLLFDRHPGGVASVSFRDPEEADYCIQTLNGRWFGGRQITAQVWDGT

Parental  TDYQVNSATIKREERLKGWEAFLESPEANKSLRRSNSICASERAGPSRVRHFSECPSTSKMNDEEAETQM
          TDYQV......REERLKGWEAFL..PEANK.L..SNSICASERAGPSR.RHFSE.PS.SKM...EA.TQM
Retrocopy TDYQVEETAKEREERLKGWEAFLNAPEANKGLGCSNSICASERAGPSRGRHFSEHPSSSKMKAQEAATQM

Parental  EFEEPIDEKKFEKSEDGGEFEEDIEESGLKKEAEKRYAQKESE----EGCLERKSEEGCPQKEFEEGGPK
          E.EEPIDE.KFEK..DGGEF.ED..ES.LK.EAE..Y..KESE....EGC..R........KE..EG.PK
Retrocopy ESEEPIDE-KFEKTKDGGEF-EDAKESDLKREAEECYPPKESERRYEEGCPQRYHRDYL-EKESGEGSPK

Parental  NESKGNGPGRESK
          .E.....P.R..K
Retrocopy KELEEVSPKRGAK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_352 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000009234	1 retrocopy	retro_mluc_352 ,
Monodelphis domestica	ENSMODG00000014087	3 retrocopies	retro_mdom_1255, retro_mdom_1891, retro_mdom_193,