RetrogeneDB ID: retro_mluc_491

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02070668:3032..4001(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000028594
• Aliases: None
• Description: None

Sequence

>retro_mluc_491
GAGTATGATGTGCTCTACCTGGGGACAGAGGATGGACACCTCCACAGAGCTGTGCGGACTGGAGCCAAGCTCAGCGTCCT
TGAGGATCTGGCCTTATTCCCAGAGCCACAGCCAGTTGAGAATATGAAATTGTATCAAAGCTGGCTCCTGGTTGGCTCCC
GTCCTGAGGTAACACAAATGAACACAACCAACTGTGGACGTCTCCAGAGCTGCCCAGAGTGCCTCCTGGCCCAAGACGCT
GTCTGTGCCTGGAGCTTCCGGCTAGCTGTGTGTGTGGCCCATGCTGGGGAGCATGGAGGGCTGGTCCAAGACATAGAGTC
AGCGGATGTCTCTTCTTTGTGTCCTAAAGAGCCTGGAGAACTCCCAGTAGTGTTTGAAGTTCCTGTGGCTACAGCTGCGC
ATGTGGTCTTGCCATGTTCCCCAAGCTCAGCCTGGGCATCCTGTGTGTGGCACCAGCCCAGTGGAGTGACTGCTTTTACC
CCCCGGAGGGATGGGTTAGAGGTGGTGGTAACCCCAGGGGCCATGGGTGCGTACGCTTGTGAATGTCAAGAGGGTGGGGC
AGCCCATGTGGTAGCAGCTGATAGCTTGGTATGGGGCAGCCAGCAGGGCCCCTCAAGCTGGGCCCACACTGTGGGGGCTG
GACTGGCTGGCTTCTTTCTGGGGGTTCTTGCAGCATCCCTGACTCTCCTCCTGATTGGTCGACGTCAGCAGCAACAGTAA
CAGAGGGAACTTCTGGCTAGAGACAACGTGGGCTCGGACCTGGGGGCACCGCCATCTGGGACCACAAGCTACTGCCAGGA
TCCTCCCTCTCCCTCTCCCTCTCCTGAAGATGAGCGGCTGCCCCTGGCTCTAGGCAAGAGGGGCAGTGGCTTTGGTGGCT
TCCCTCTACCTTTTCTGCTTGACTCTTGCCCAAGCCCAGCCCATATTCGGTTAACTGGGGCTGCTCTGGCCACATGTGAT
GAAACATCC

Alignment

ORF - retro_mluc_491 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.54 %
• Parental protein coverage: 73.62 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EYDVLYLGTEDGHLHRAVRIGAKLSVLEDLALFPEPQPVENMKLYQSWLLVGSHTEVTQVNTTNCGRLQS
          EYDVLYLGTEDGHLHRAVR.GAKLSVLEDLALFPEPQPVENMKLYQSWLLVGS..EVTQ.NTTNCGRLQS
Retrocopy EYDVLYLGTEDGHLHRAVRTGAKLSVLEDLALFPEPQPVENMKLYQSWLLVGSRPEVTQMNTTNCGRLQS

Parental  CSECILAQDPVCAWSFQLDACVAHADEHGGLVQDIESADVSSLCPKEPGEHPVVFEVPVATAAHVVLPCS
          C.EC.LAQD.VCAWSF.L..CVAHA.EHGGLVQDIESADVSSLCPKEPGE.PVVFEVPVATAAHVVLPCS
Retrocopy CPECLLAQDAVCAWSFRLAVCVAHAGEHGGLVQDIESADVSSLCPKEPGELPVVFEVPVATAAHVVLPCS

Parental  PSSAWASCVWHQPSGVTAFTPRRDGLEVVVTPGAMGAYACECQEGGAARVVAAYSLVWGSHQGPSSRAHT
          PSSAWASCVWHQPSGVTAFTPRRDGLEVVVTPGAMGAYACECQEGGAA.VVAA.SLVWGS.QGPSS.AHT
Retrocopy PSSAWASCVWHQPSGVTAFTPRRDGLEVVVTPGAMGAYACECQEGGAAHVVAADSLVWGSQQGPSSWAHT

Parental  VAAGLAGFFLGVLAASLTLLLIGRRQQLRRQRELLARNKVGLDLGAPPSGTTSYSQDPPSPSPEDE--RL
          V.AGLAGFFLGVLAASLTLLLIGRRQQ...QRELLAR..VG.DLGAPPSGTTSY.QD........E..RL
Retrocopy VGAGLAGFFLGVLAASLTLLLIGRRQQQQ*QRELLARDNVGSDLGAPPSGTTSYCQDXXXXXXXXEDERL

Parental  PLALGKRGSGFGGFPPPFLLDPCPSPAHIRLTGAPLATCDETS
          PLALGKRGSGFGGFP.PFLLD.CPSPAHIRLTGA.LATCDETS
Retrocopy PLALGKRGSGFGGFPLPFLLDSCPSPAHIRLTGAALATCDETS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_491 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000028594	1 retrocopy	retro_mluc_491 ,