>retro_mluc_498
GGGAAAGGGGTTGTGAGTCAGAACAAGGAGCACAAATCATCCTATAAAGAAAAACGTCCAGTGGATGCCAGGGGAGATGA
GAAGTCGCCTTTGAGCAGAGAGAAATCCCACAAGGCCATCGCCAAAGAGGAAAACCGGAGGCCCTCTCAGGGGATGGCAC
GAAGGAGAAAGCGCCCTCTAGTGATATCAAGAAAGAGAAGGATGGAGAGGGCAGCTCCAAGAAGTTTTCATCCATCCCCC
TTGGAGACTGCTCCAGACAACCACCATAAAAAGCAAAAGCACAAAGACTCAGAGAAAACTAAATCAGACAAAAACAAGCA
AAGTCTAGACAGCCTAGACAGAGGAAAGGGGGCCGGAGACCTGCTGCCCAAAGCAAAAGAGAAGGTTTCTGACAACCTAA
AGACTCAAGAAGAGAAAGTGAAAACTCATTCAGACAGAAAGTCAGCGGGCTCCCTCCCTAGAGTTGAGGAGATGGCTATG
GGTGAAGAATTTGAGCAGCCCACCATGTCTTTTGAGTCCTATCTCAGCTATGACCAGCCCCGGAAGAAAAAGAAAAAGAT
TGTGAAAACCTCAACTGCGACTGCTGGAGAAAAAGCACTTAAAAAAAATGATTCGAAAAGCACTGGTAAAAGCTCGGATA
CAGTTCAGAAATTGCCTAAGGTGAGTGGGAACAAGTCCAAGAAGCATCAGGCAGCTGGAGCCGATGCAGCCAAGCCGAGA
AAGGTCCCCATCGATGTCCTGCCAGTGTTGCCAGGCATCTCATTACCTGTGATACAGGCCAATGACCGGCCGCTTCCTTC
CCTCGAATTGATATCCTCCTTCCAACCAAAGCGAAAAGCACACTCTTCTTCCCAGGAGGAGGAGGAAGTTGGATTCACTG
GGCGGAGAATGCATTCTAAGATGCAGGTGTACTCTGGTTCCAAGTGTGCCTATCTCCCCAAAATGATGACCTTGCACCAG
CAGTGCATCCGGGTCCTTCAAAACAACATTGATTCAATCTTTGAAGTGGGAGGCGTCCCGTATTCTGTTCTTGAACCCGT
TTTGGAGAGGTGTACCCCTGATCAGCTGTATCGCATAGAGGAATACAATCATGTATTAATTGAAGAAACAGATCAATTAT
GGAAAGTTCATTGTCACCGAGACTTTAAGGAAGAAAGGCCAGAAGAGTATGAGTCATGGCGGGAGATCTACTTGAGGCTT
CAGGATGCCCGAGAGCAGCGGCTACAGTTATTGACAAAGAATATCCAATGTGCACATGCCAATAAACACAAAGGCCGACA
GACAAAGATGGTCTCTGTAGCCAAACCACCTCGTGATGTTCAAGGAGGCAGGAGAAGTTTGGAACAGGAGGAGCAGCTGT
GCCCGAGAAAATCGGGATTAAGCCAGCCCCCTACCCCATAGGAAGCAGCCAAGCTCCCTCCAACAGTGGCAGCAGC
ORF - retro_mluc_498 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.69 % |
Parental protein coverage: |
59.98 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | GKGVVSQNKEHKSSHKEKRPVDARGDEKSPLSREKSHKAIAKEENRRP-LSGDGTKEKAPSSGIK-KEKD |
| GKGVVSQNKEHKSS.KEKRPVDARGDEKSPLSREKSHKAIAKEENRRP.LSGDGTKEKAPSS.IK.K... |
Retrocopy | GKGVVSQNKEHKSSYKEKRPVDARGDEKSPLSREKSHKAIAKEENRRP<LSGDGTKEKAPSSDIK>KRRM |
|
Parental | REGNSKKFS-SPLETASDNHRKKQKHKDSEKTKSDKNKQSLDSLDRGKGAGDLLPKAKEKVSNNLKTQEG |
| .......F..SPLETA.DNH.KKQKHKDSEKTKSDKNKQSLDSLDRGKGAGDLLPKAKEKVS.NLKTQE. |
Retrocopy | ERAAPRSFHPSPLETAPDNHHKKQKHKDSEKTKSDKNKQSLDSLDRGKGAGDLLPKAKEKVSDNLKTQEE |
|
Parental | KVKTHSDRKSAGSLPRVEETDMDDEFEQPTMSFESYLSYDQPRKKKKKIVKTSTATAGEKALKKNDSKST |
| KVKTHSDRKSAGSLPRVEE..M..EFEQPTMSFESYLSYDQPRKKKKKIVKTSTATAGEKAL...DSKST |
Retrocopy | KVKTHSDRKSAGSLPRVEEMAMGEEFEQPTMSFESYLSYDQPRKKKKKIVKTSTATAGEKALXXXDSKST |
|
Parental | SKSSDTVQKSPKVNENKSEKHQAAGADAAKPRKVPIDVLPVLPDIPLPVIQANYRPLPSLELISSFQPKR |
| .KSSDTVQK.PKV..NKS.KHQAAGADAAKPRKVPIDVLPVLP.I.LPVIQAN.RPLPSLELISSFQPKR |
Retrocopy | GKSSDTVQKLPKVSGNKSKKHQAAGADAAKPRKVPIDVLPVLPGISLPVIQANDRPLPSLELISSFQPKR |
|
Parental | KAHSSSQEEEEVGFTGRRMNSKMQVYSGSKCAYLPKMMTLHQQCIRVLKNNIDSIFEVGGVPYSVLEPVL |
| KAHSSSQEEEEVGFTGRRM.SKMQVYSGSKCAYLPKMMTLHQQCIRVL.NNIDSIFEVGGVPYSVLEPVL |
Retrocopy | KAHSSSQEEEEVGFTGRRMHSKMQVYSGSKCAYLPKMMTLHQQCIRVLQNNIDSIFEVGGVPYSVLEPVL |
|
Parental | ERCTPDQLYRIEEYNHVLIEETDQLWKVHCHRDFKEERPEEYESWREMYLRLQDAREQRLQLLTKNIRSA |
| ERCTPDQLYRIEEYNHVLIEETDQLWKVHCHRDFKEERPEEYESWRE.YLRLQDAREQRLQLLTKNI..A |
Retrocopy | ERCTPDQLYRIEEYNHVLIEETDQLWKVHCHRDFKEERPEEYESWREIYLRLQDAREQRLQLLTKNIQCA |
|
Parental | HANKPKGRQAKMAFVHSVAKPPRDVR-RRQEKFGTGGAAVPEKIRIKPAPYPIGSSQAPSNSGNS |
| HANK.KGRQ.KM....SVAKPPRDV..RRQEKFGTGGAAVPEKI.IKPAPYPIGSSQAPSNSG.S |
Retrocopy | HANKHKGRQTKMV---SVAKPPRDVQ<RRQEKFGTGGAAVPEKIGIKPAPYPIGSSQAPSNSGSS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_498 was not experimentally validated.
Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
5 parental genes, and
5 retrocopies.