RetrogeneDB ID: | retro_mluc_509 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429767:6875201..6876147(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PABPC1L | ||
Ensembl ID: | ENSMLUG00000006324 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.92 % |
Parental protein coverage: | 52.37 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | WSQRDPRLRKSGVGNIFIKNLEESIDNKALYDTFSTFGNILSCKVACDDHGSRGFGFVHFETREAAQQAI |
WSQRDP.L.KSGVG.IF..N.EES.DNK...DTFST.GNILSCKV.C.D.GSRGF.FVH.ETREAAQQAI | |
Retrocopy | WSQRDPGLGKSGVGSIFMENPEESLDNKD--DTFSTAGNILSCKVVCEDRGSRGFDFVHVETREAAQQAI |
Parental | STMNGMLLNNRKVFVSHFKSRQEREAELGV-RAMEFTNVYVKNL-QMDIDEQGLEE-LFSQFGKTLSVKV |
S..NGM.LN.RKV..S..K..QEREAELG..RA..FTN.Y.KN..QMDIDEQGLEE..FSQFGK.LSVK. | |
Retrocopy | SILNGM*LNDRKVLFSPCKP*QEREAELGL<RAVGFTNIYLKNH<QMDIDEQGLEE<VFSQFGKMLSVKA |
Parental | MRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGQLLYVGRAQKWAERQNELKRKFQQMKQMKQDRLN |
...DSGHS.GFGFV.FEK....QKAV....GKEV.GQ.LYVG.AQ...ERQNELKR.FQ...QM.QDRLN | |
Retrocopy | RSNDSGHSQGFGFVTFEK----QKAVQ--SGKEVGGQRLYVGHAQ---ERQNELKRRFQ---QMEQDRLN |
Parental | HYQGVNLYVKNLDDSIDNERLRKEFSPYGVITSAKVMTEGGH-SKGFGFVCF-SSPEEATKAVTEMNGCI |
H.QGVN.Y.KNL.D.....R.RKEF.PYG.ITSA..MTEGG....G.....F.SSPEEATKAVTEMNG.I | |
Retrocopy | H*QGVNWYAKNLEDYLVL-RDRKEFPPYGAITSARLMTEGGQ<AQGLALCVF<SSPEEATKAVTEMNGYI |
Parental | LGTKPLYVALAQRKDERKAILTNQFMQQRLSNVWALGGPLLGSFQQPVSYFLPTVPQ |
LGT.PL.VALAQRK.E.KAILTNQFMQQR.SNVWAL.GPLL.SFQQP.S.FL.T.PQ | |
Retrocopy | LGTTPLDVALAQRKEEWKAILTNQFMQQRHSNVWALDGPLLDSFQQPASCFLSTLPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000007905 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000000974 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000530 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006324 | 1 retrocopy |
retro_mluc_509 ,
|
Myotis lucifugus | ENSMLUG00000012068 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012245 | 1 retrocopy |