RetrogeneDB ID: retro_mluc_612

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429769:32502100..32502970(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NACC1
• Ensembl ID: ENSMLUG00000003937
• Aliases: None
• Description: None

Sequence

>retro_mluc_612
CAGCCGGAGCGCTGTGGTAGAGCTGCCGGCGGCTGTGCAGCCCCAGCAGGGGGCGTGGTGAGCGGGCCCAGCGGGTCCGA
GCGGACCAGCCCTGGTACCTCGAGCGCCTATACTAGCAACAGCCCAGGCTCTTATCACAATGAGGAGGATGAGGAGGAGG
ATGCGGGCGAGGAGGGCACAGACGAGCAATACCGGCAGATCTGCAACATGTACACCATGTATAGCATGATGAATGTCGGC
CAAAGTGCCGAGAAGGTGGAGGCCCTCCCAGAGCAGGTGACCCCTGAATCCCGGAATCGCATCCCGGTGAGGCAAGACTT
GGCGTCTCTCCCAGCCGAGCTCATCAACCAGATCGGTAATCGCTGCCACCCCAAGTTCTATGATGAGGGCGATTCCTCTG
AGAAGCTAGAGCTGGTGACAGGCACCAATGTGTACATCACAAGGGCACAGCTCATGAACTGCCATGTCAGTGCAGGCACA
CAGCACAAGGTCCTGCTGTGGCGCCTCCTGGCCTCCTTCTTTGACCGGAACACACTGGCTAACAGCTGTGGCACTGGCAT
CCGCTCTTCCACCAATGACCCCAGATGCAAACCGCTGGACAGTCGCGTCCTCCATGCTGTCAAGTACTACTGCCAGATCT
TTGCTCCAAACTTCAAGGAGAGGGAAACGAATGCCATTGCGGCCAACATGTGCACCAATGCCCGCCGTGTCCTGCGAAAG
AGCTGGGTTCCCAAGGGGAAGCCCCCTGAGGGTGATACCTAAACCACCTTCATCAGTGACATGGGCAAGCCGGAGCCGGA
CATGATGGGCGCGGAGCACAGCTTTGAAACAGCCAGCCATGCTGGCGAGGCTGGCCCCTCAGCCAAGGCC

Alignment

ORF - retro_mluc_612 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.66 %
• Parental protein coverage: 56.86 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RPPQQALAAAAAAAAAGGVVSGPSMSERTSPGTSSAYTSDSPGSYHNEEDEEEDAGEEGTDEQYRQICNM
          .P.....AA...AA.AGGVVSGPS.SERTSPGTSSAYTS.SPGSYHNEEDEEEDAGEEGTDEQYRQICNM
Retrocopy QPERCGRAAGGCAAPAGGVVSGPSGSERTSPGTSSAYTSNSPGSYHNEEDEEEDAGEEGTDEQYRQICNM

Parental  YTMYSMMNVGQSAEKVEALPEQVTPESRNRIRVRQDLASLPAELINQIGNRCHPKLYDEGDPSEKLELVT
          YTMYSMMNVGQSAEKVEALPEQVTPESRNRI.VRQDLASLPAELINQIGNRCHPK.YDEGD.SEKLELVT
Retrocopy YTMYSMMNVGQSAEKVEALPEQVTPESRNRIPVRQDLASLPAELINQIGNRCHPKFYDEGDSSEKLELVT

Parental  GTNVYITRAQLMNCHVSAGTRHKVLLRRLLASFFDRNTLANSCGTGIRSSTNDPRRKPLDSRVLHAVKYY
          GTNVYITRAQLMNCHVSAGT.HKVLL.RLLASFFDRNTLANSCGTGIRSSTNDPR.KPLDSRVLHAVKYY
Retrocopy GTNVYITRAQLMNCHVSAGTQHKVLLWRLLASFFDRNTLANSCGTGIRSSTNDPRCKPLDSRVLHAVKYY

Parental  CQNFAPNFKESEMNAIAADMCTNARRVVRKSWIPKGKPPEGDTYTTFISDTGKLEPDMMGVEHSFETASH
          CQ.FAPNFKE.E.NAIAA.MCTNARRV.RKSW.PKGKPPEGDT.TTFISD.GK.EPDMMG.EHSFETASH
Retrocopy CQIFAPNFKERETNAIAANMCTNARRVLRKSWVPKGKPPEGDT*TTFISDMGKPEPDMMGAEHSFETASH

Parental  DGEAGPSAEA
          .GEAGPSA.A
Retrocopy AGEAGPSAKA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_612 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000003937	1 retrocopy	retro_mluc_612 ,