RetrogeneDB ID: retro_mluc_617

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429769:3480550..3481214(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024005
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000013501
• Aliases: None
• Description: None

Sequence

>retro_mluc_617
ATGTCGGAGAAGGAAGGCGGGTCGGGCGGGGCTCCCCGCAGGCCAGCGCGGTGACGGTCAGCGATGTCCAGGAGCTGATA
CGGCGCAAAGAGGAGATCGAAGCGCAGATCAAGGCCAGTTATGGCGTATTGGAGAGCCTAAAAGGTGTTGGGATGAATGA
GCCGCTGGTGGACTGCGAGGGTTACCCCCGCTCAGACGTGGACCTGTACCAAGTTCGAACTGCCAGGCACAACATCGTCT
GCTTGCAGAACGATCACAAGGCGGTGATGAAGCAGGTGGAGGAGGCCCTGCACCAGCTGCATGCTCGGGACAAGGAGAAG
CAGGCCCGGGACATGGCCGAGGCCCAGGAAGAGGTCATGAGCCGAAGTCTGAGCCAGAGCGAGGGCCTCAGCCTCCCTCA
GGCCTTTGCCGAAGTGAACAGCATCAGCCCCGGCTCCCCTGCCAGCATCGCGGGTCTGCAAGTGGATGATGAGATTGTGG
AGTTTGGCTCCGTAAACACCCAAAACTTCCAGTCGCTGCAAAACATTGGCACCGTGGTGCAGCACAGTGAGGGGAAGCCC
CTGAATGTGACAGTGATCCGCAGAGGGGAGAAACACCGGCTTAGACTTGTCCCAACGCGCTGGGTGGGGAGGGACTGCTG
GGCTGCAACATTATTCCTTTGCAA

Alignment

ORF - retro_mluc_617 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.98 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MSEKEGGSGGA-SPQASAVTVSDVQELIRRKEEIEAQIKANYGVLESLKGVGMNEPLVDCEGYPRSDVDL
          MSEKEGGSGGA.SPQASAVTVSDVQELIRRKEEIEAQIKA.YGVLESLKGVGMNEPLVDCEGYPRSDVDL
Retrocopy MSEKEGGSGGA<SPQASAVTVSDVQELIRRKEEIEAQIKASYGVLESLKGVGMNEPLVDCEGYPRSDVDL

Parental  YQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAQEEAMSRSLSQSEGLSPPQAFAKV
          YQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAQEE.MSRSLSQSEGLS.PQAFA.V
Retrocopy YQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAQEEVMSRSLSQSEGLSLPQAFAEV

Parental  NSVSPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNIGTVVQHSEGKPLNVTVIRRGEKHRLRLVPTRWA
          NS.SPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNIGTVVQHSEGKPLNVTVIRRGEKHRLRLVPTRW.
Retrocopy NSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNIGTVVQHSEGKPLNVTVIRRGEKHRLRLVPTRWV

Parental  GK-GLLGCNIIPLQ
          G..GLLGCNIIPLQ
Retrocopy GR<GLLGCNIIPLQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_617 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000008038	1 retrocopy	retro_cfam_1020,
Loxodonta africana	ENSLAFG00000008585	1 retrocopy	retro_lafr_144,
Myotis lucifugus	ENSMLUG00000013501	1 retrocopy	retro_mluc_617 ,
Ochotona princeps	ENSOPRG00000016588	1 retrocopy	retro_opri_839,
Tursiops truncatus	ENSTTRG00000003021	1 retrocopy	retro_ttru_499,