RetrogeneDB ID: retro_mluc_664

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429770:27682994..27683541(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000003503
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: RPUSD3
• Ensembl ID: ENSMLUG00000006135
• Aliases: None
• Description: None

Sequence

>retro_mluc_664
GCCACCTACTGGGCTGTCACTGATGGGATCCCAGCTACTTCTGAGGGGAAGACCCAAGCAGCTCTGAAACCGGAACACGT
TGATGGTATTGGTTTTGTAGTTCCAGTGAAGTCCCGTCCCGAAAGGACATCCTGGAAGGTGTCAAGAGGACCCTAAGCCT
CTTCCGTGTGGTGGCCACAGGCTCTGGCTGTGCTCTGGTCCAGCTGCAACCACTAACCGTGTTCCCTGATCAGCTACAGG
TTCACATGGTACTACAGCTCTGCCCTGTGCTCGGGGACCACAGGTGTTCAGCCGCATGGGCACTGTCATGGGCCAACACT
TTCTACTGCCGGCAGAGAGCACCAAACCCCAAAGACAGGTCCTGGATGGAGCCCTCCGCAGACGCCTCCACCTGATGCCT
GCCCAGGCTGCCCAGATGCCCTTGCACCTCCACCTGCACTGTCTCCACCTCCCAGGCACCAGGCCCAGGGATGCCCCCAT
AGAGCTTTTGGCACCTTTGTCCTCTTATTTCTCCAGGACCCTACAGTGCCTGGGGCTCCACCAACAA

Alignment

ORF - retro_mluc_664 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.57 %
• Parental protein coverage: 52.59 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  ATYWAVTDGIPAASEGKIQAALKLEYVDGVGSVVPVKS-PSRKDILEGVKRTLSHFRVVATGPGCALVQL
          ATYWAVTDGIPA.SEGK.QAALK.E.VDG.G.VVPVKS.PSRKDILEGVKRTLS.FRVVATG.GCALVQL
Retrocopy ATYWAVTDGIPATSEGKTQAALKPEHVDGIGFVVPVKS<PSRKDILEGVKRTLSLFRVVATGSGCALVQL

Parental  QPVTVFSSQLQVHMVLQLCPVLGDHRYS-SRVGTVLGQRFLLPAESTKPQKQVLDEALLRRLHLTPAQAA
          QP.TVF..QLQVHMVLQLCPVLGDHR.S.SR.GTV.GQ.FLLPAESTKPQ.QVLD.AL.RRLHL.PAQAA
Retrocopy QPLTVFPDQLQVHMVLQLCPVLGDHRCS<SRMGTVMGQHFLLPAESTKPQRQVLDGALRRRLHLMPAQAA

Parental  QMPLHLHLHCLHLPGTRPRDAPIELLAPLPSYFSRTLQCLGLCQQ
          QMPLHLHLHCLHLPGTRPRDAPIELLAPL.SYFSRTLQCLGL.QQ
Retrocopy QMPLHLHLHCLHLPGTRPRDAPIELLAPLSSYFSRTLQCLGLHQQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_664 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000006135	1 retrocopy	retro_mluc_664 ,