RetrogeneDB ID: retro_mluc_665

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429771:4794..6108(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025960
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: WARS
• Ensembl ID: ENSMLUG00000011737
• Aliases: None
• Description: tryptophanyl-tRNA synthetase [Source:HGNC Symbol;Acc:12729]

Sequence

>retro_mluc_665
GCAGCCCAGGATGAAATTGATTCTGCACTGAAGAGGCTGTTATTGCTAAAAATGAGCTACAACGTGGCCATGGGGGAGAA
CTACAAGGTGGACTGCCTTCCAGAGAACCTTGCACCTGGGTTAGTGGCCCCGGTGCCATGGAAGCTGAATTGGATTTTGT
GGACCCCTGAACTGTACAGAGGAACAGTGCAAAAGGCAGTGACTATGACAAGCTCATCGTTCTGTTTGGAACCAGTAACA
TTGACCAAGAGCTGATAAACAGAAGAGAGAGAGCCAGGGGCCAGAGACCACACCGCTTCCTGCACAGATGCACCTTCTTC
TGACACAGAGACATGAACCAAGTCCTCGATACCTATGAAAACAAGAAGCTGTTTCGCTTGTATTTGGGCAGGGGGCCCTC
TTCCGAAGCCATGCATGTAGGCCACCACATCCCATTCATTTTCACAAAGTGGCTGCAGGACATGTTCAATGTGCTCTTGC
TCATCCAGATGACCGATGACTAGAAGTACCTGTGGAAGACCTGACCCTGGACCAGGCCTATGGTTACTCCGTGGAAAATG
CCAAGGACATCATCACCTGCAGCTTTCACATCAACAAGCCCATCTTCTCTGACCTCGACTACCTGGGGGTGAGCCCAGAC
TTCTACAAGAACATGGTGAAGATCAGAAATATGTGACCTTCAACCAAGTGAAAGGCATTTTTGGCTTCGCCTACAGTGAC
TGCATGGGTAACATCAGCTTTCCTGCCATCCAGGCTGCTCCCTCCTTCAGCAACTCATTCTCACAGATCTTCCGGGGTGA
GTTGGACATCCAGGGCCTCATCCCCTGTGCCATCAACCAGGATCCTTACTTCAGAATGACAAGAGATATCACTCCCAGGA
TCTGCTATCCTAAACCACCCTGCTACACTCAACTTTCTTCCCCTCCCTGCAGGGGACTCAGACCCAAAGGAGTGCCAGCA
ACCCCAACTCCCCCATCTTCCTCACAGACACAGCCAAGCAGATCAAGACCAAGGTCAACAAGCATGCTTTTTCTGGAGGG
AAAGACACCATCAAGGAAGCACAAGCAGTTTGGGGAAAATGGCCACGTGGACGTGTCCTTCATGTACATGACCTTCTTCC
TTGAGGATGAGGACAAGCTGGAGCAGATCAGGAAGGATTACAGCAGTGGAGCCATGCTCACCTGGGAGCTCAAGAAGGAT
CTCGTGGAGGTCCGGCAGCCGCTCCTGGCGGAGCACCAGGCCAGGTGCAAGGAGGCCAGGGAGGAGATAGTCAAAGTGTT
CTTGACCCCCCGGAAGCTGTCCTATGACTTTCAA

Alignment

ORF - retro_mluc_665 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.13 %
• Parental protein coverage: 92.84 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  ASKDELDSAVKKLLSLKMSYKAAMGEDYKADC-PPNNPAPAGDSGPDATEAEEDFVDPWTVQTSSAKGVD
          A..DE.DSA.K.LL.LKMSY..AMGE.YK.DC.P...P.....SGP.A.EAE.DFVDP.TVQ..SAKG.D
Retrocopy AAQDEIDSALKRLLLLKMSYNVAMGENYKVDC<PSREPC-TWVSGPGAMEAELDFVDP*TVQRNSAKGSD

Parental  YDKLIVRFGSSKIDKELINRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAM
          YDKLIV.FG.S.ID.ELINR.ERA.GQRPHRFL.R..FF.HRDMNQVLD.YENKK.F.LY.GRGPSSEAM
Retrocopy YDKLIVLFGTSNIDQELINRRERARGQRPHRFLHRCTFF*HRDMNQVLDTYENKKLFRLYLGRGPSSEAM

Parental  HVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWK-DLTLDQAHGYAVENAKDIIACGFDINKTFIFSDL
          HVGH.IPFIFTKWLQD.FNV.L.IQMTDD.KYLWK.DLTLDQA.GY.VENAKDII.C.F.INK..IFSDL
Retrocopy HVGHHIPFIFTKWLQDMFNVLLLIQMTDD*KYLWK<DLTLDQAYGYSVENAKDIITCSFHINKP-IFSDL

Parental  DYMGMSPGFYRNVVKI-QKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFGDKTDVQCLI
          DY.G.SP.FY.N.VKI.QK.VTFNQVKGIFGF..SDC.G.ISFPAIQAAPSFSNSF.QIF....D.Q.LI
Retrocopy DYLGVSPDFYKNMVKI<QKYVTFNQVKGIFGFAYSDCMGNISFPAIQAAPSFSNSFSQIFRGELDIQGLI

Parental  PCAIDQDPYFRMTRDVAPRIGYPKP-ALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHA
          PCAI.QDPYFRMTRD..PRI.YPKP..LLHSTFFP.LQG.QT..SAS.PNS.IFLTDTAKQIKTKVNKHA
Retrocopy PCAINQDPYFRMTRDITPRICYPKP<TLLHSTFFPSLQGTQTQRSASNPNSPIFLTDTAKQIKTKVNKHA

Parental  FSGGRDTIEE-HRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKELVEVLQPLIAEH
          FSGG.DTI.E.H.QFG.N..VDVSFMY.TFFLED.DKLEQIRKDY.SGAMLT.ELKK.LVEV.QPL.AEH
Retrocopy FSGGKDTIKE>HKQFGENGHVDVSFMYMTFFLEDEDKLEQIRKDYSSGAMLTWELKKDLVEVRQPLLAEH

Parental  QARRKEVTEEIVKEFMTPRKLSYDFQ
          QAR.KE..EEIVK.F.TPRKLSYDFQ
Retrocopy QARCKEAREEIVKVFLTPRKLSYDFQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_665 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000011737	3 retrocopies	retro_mluc_1007, retro_mluc_665 , retro_mluc_996,
Otolemur garnettii	ENSOGAG00000032196	3 retrocopies	retro_ogar_1773, retro_ogar_1914, retro_ogar_3506,