RetrogeneDB ID: retro_mluc_698

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429771:13602250..13602540(-)
• Located in intron of: ENSMLUG00000006578

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C20orf24
• Ensembl ID: ENSMLUG00000009696
• Aliases: None
• Description: chromosome 20 open reading frame 24 [Source:HGNC Symbol;Acc:15870]

Sequence

>retro_mluc_698
ATGAGTGGCAGGAGGTGGAAGGAGGAGCTGCCTCAGCCTCAGCTGGACAACAGGGTCCTCAAAGTCTCTGTGTGGAGCAA
GGTGCTGCGAAGTGACGCAGCCTGGGAGAACAAGGATGAATTTTTAGATGTGATCTACTGGTTCCGACAGATTATTGCTG
TGGTTCTAGGTGTCATTTGGGGAGTGTTACCATTGCAAGGTTTCTTGGGAATAGAAGGTTCTGCCTGATCATTGCAGGAG
TCTTGTACCTCTACTTCAGCAACTACCTACAGATAGAATATGGTGGCACA

Alignment

ORF - retro_mluc_698 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.15 %
• Parental protein coverage: 72.99 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MSGGRRKEDPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLG
          MSG.R.KE..PQPQL.N..LKVSVWSKVLRSDAAWE.KDEFLDVIYWFRQIIAVVLGVIWGVLPL.GFLG
Retrocopy MSGRRWKEELPQPQLDNRVLKVSVWSKVLRSDAAWENKDEFLDVIYWFRQIIAVVLGVIWGVLPLQGFLG

Parental  IAG-FCLINAGVLYLYFSNYLQIDEEEYGGT
          I.G.FCLI.AGVLYLYFSNYLQI...EYGGT
Retrocopy IEG<FCLIIAGVLYLYFSNYLQI---EYGGT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_698 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000010103	1 retrocopy	retro_amel_813,
Myotis lucifugus	ENSMLUG00000009696	1 retrocopy	retro_mluc_698 ,