RetrogeneDB ID: retro_mluc_711

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429772:10547346..10548300(+)
• Located in intron of: ENSMLUG00000011502

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: IL2RG
• Ensembl ID: ENSMLUG00000006913
• Aliases: None
• Description: None

Sequence

>retro_mluc_711
CTGCCCCTCCCAGAGGTTCAGTGTTTTGTATTCAATGTCGAGTACATGAATTGCATTTGGGACAGCAGCTCTGAGCCTCG
GCCCACCAACCTGACTCTGCACTATTGGTACGGGAACTCTGGTCATGACAAAGTCCAGGAGTGTGGCCACTACCTATACT
CTTCAGAGATCACTTCTGGCTGCTGGTTGGGAAAAGAGGAGATCCATCTCTACCAAACATTTGTTGTCCAGCTCCAGGAC
CCACAGGAACTTGGGAGGAAGACCAAAAAGAGGCTAAAACTGGAGGATCTGGTGATTCCCTGGGCTCCAGAGAACCTAAC
ACTTCACAACCTGAGTGAATCCCAGCTAGAACTGAGGTGGAGCAGCAGATACTCTGTGGGCCACTGTTTGGAGCACCTGG
TGCAGTACCGGAGTGACCAGGACCGCAGCTGGATTGAGCAGTCAGTGGGCCACAGATGTAGCTTCTCTTTGCCTAGTGTG
GATGGGCAGAAGCTCTACACGTTTCGTGTTCGGAGTCGCTATAACCCACTCTGTGGAAATGCTCAGCATTGGAGTGAATG
GAGCCACCCGATCCACTGGGGCAGCCATACTTCAAAGAAGCCCATAGTGCCCCCATCACTGTTTGCACTGGAAGCCGTGC
TCATCCCCCTTGGCTCGGTGGGACTGATTGTTAGTCTCATCTTTGTGTACTGCTGGCTAGAAAGGACCGTACCCCGAGTT
CCTACCCTCAAGAGCCTGGAGGATCTGGTTATCAAATACCATGGGAACTTTTCGGCCTGGAGTGGTGTGTCTAAGGAACT
GGTGGAGAGCCTGCAGCCAGACTACAGTGAAAGGCTCTGCCACATCAGTGAGATTCCCCCAAAAGGAGATGCTCTAGAGG
AGGGGCCTGGGGGCTCCCCCTGCAGCCAGCATAGCTCCTCCTGGACTCCCCCATGTTACACCCTATAACCTGAA

Alignment

ORF - retro_mluc_711 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.02 %
• Parental protein coverage: 85.87 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LPNLEVQCFVFNVEYINCTWNSSSEPQPTNLTLHYWYKNSGHN-IQECGHYLYSSEITSGCWLGKEEINL
          LP..EVQCFVFNVEY.NC.W.SSSEP.PTNLTLHYWY.NSGH...QECGHYLYSSEITSGCWLGKEEI.L
Retrocopy LPLPEVQCFVFNVEYMNCIWDSSSEPRPTNLTLHYWYGNSGHDKVQECGHYLYSSEITSGCWLGKEEIHL

Parental  YQTFFVQLQDPQEPRRKTKKELRLQDLVIPWAPKNLTLHNLSESQIELRWSNTY-LDHCLEHLVQYRSDR
          YQTF.VQLQDPQE..RKTKK.L.L.DLVIPWAP.NLTLHNLSESQ.ELRWS..Y...HCLEHLVQYRSD.
Retrocopy YQTFVVQLQDPQELGRKTKKRLKLEDLVIPWAPENLTLHNLSESQLELRWSSRYSVGHCLEHLVQYRSDQ

Parental  DHSWTEQSVDQRRSFSLPSVDGRKLYTFRVRSRHNPLCGSAQHWSEWSHPIHWGSHTSKESIEPPSLFAL
          D.SW.EQSV..R.SFSLPSVDG.KLYTFRVRSR.NPLCG.AQHWSEWSHPIHWGSHTSK..I.PPSLFAL
Retrocopy DRSWIEQSVGHRCSFSLPSVDGQKLYTFRVRSRYNPLCGNAQHWSEWSHPIHWGSHTSKKPIVPPSLFAL

Parental  EAVLIPLGSMGLIISLICVYCWLERTMPRIPTLKSLEDLVTEYHGNFSAWSGVSKGLAESLQPDYSERLC
          EAVLIPLGS.GLI.SLI.VYCWLERT.PR.PTLKSLEDLV..YHGNFSAWSGVSK.L.ESLQPDYSERLC
Retrocopy EAVLIPLGSVGLIVSLIFVYCWLERTVPRVPTLKSLEDLVIKYHGNFSAWSGVSKELVESLQPDYSERLC

Parental  HVSEIPPKGVALGEGPGGSPCSHHSPYGAPPCYTLKPE
          H.SEIPPKG.AL.EGPGGSPCS.HS....PPCYTL.PE
Retrocopy HISEIPPKGDALEEGPGGSPCSQHSSSWTPPCYTL*PE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_711 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000006913	1 retrocopy	retro_mluc_711 ,