RetrogeneDB ID: retro_mluc_727

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429773:1986033..1986577(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030467
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ACER2
• Ensembl ID: ENSMLUG00000007595
• Aliases: None
• Description: None

Sequence

>retro_mluc_727
TACTGGCGGGATCAGCTGCGGGCTGGCAGTTCAGAGGCAGACTGGTGCGAGGACAACTACACCATCGTGTCTGCCATCAC
CAAGTTCTACAACAGGATCAGCAACGTCTTGTTTTTCATTTTACTGCCCATCTTGTTTCATCAGTGTGCAATGTGTTTCA
ACAATGGCATTTACTTAATATGGACTCTTTTAGTTTTGGTAGGAATTGGATTTGTCTACTTTCACACAACTCTTGAGTTT
CCTGGGTCAGATGCTGGATGAACTTGCAATCCTTTGGGTTCTGATGTGTGCTCTGACCATGTGGTTGCCTAGAAGGTCTA
CTAAAGATCTTCCGGAACGACATGGCAGGTTCAAGGCAGTGGTCTACATCCTGTCTGCAGTTACAACGTGCCTGGAATTT
GTCAAGCATGCTATCAACATCTCTCTGAGGACACTGGGGGTTCCTTGCATTGTGCTGCTCATTGCAGAGCTAAAGAGGTG
TGACAATGTGCATATATTTAAACTGGGCCTCTTCTCAGGCCTCTGTTGGATCCTTGCCCTCTTC

Alignment

ORF - retro_mluc_727 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.01 %
• Parental protein coverage: 67.64 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  HWWDQLRAGSSEVDWCEDNYTIVPAIAEFYNTISNVLFFILPPICMCLFRQYATCFNSGIYLIWTLLVVV
          .W.DQLRAGSSE.DWCEDNYTIV.AI..FYN.ISNVLFFIL.PI...LF.Q.A.CFN.GIYLIWTLLV.V
Retrocopy YWRDQLRAGSSEADWCEDNYTIVSAITKFYNRISNVLFFILLPI---LFHQCAMCFNNGIYLIWTLLVLV

Parental  GIGSVYFHAT-LSFLGQMLDELAILWVLMCALAMWFPRRYLPKIFRNDRGRFKAVVCVLSAVTTCLAFVK
          GIG.VYFH.T.LSFLGQMLDELAILWVLMCAL.MW.PRR...K......GRFKAVV..LSAVTTCL.FVK
Retrocopy GIGFVYFHTT>LSFLGQMLDELAILWVLMCALTMWLPRR-STKDLPERHGRFKAVVYILSAVTTCLEFVK

Parental  PAINNISLMTLGIPCTALLIAELKRCDNVRVFKLGLFSGLWWTLALF
          .AI.NISL.TLG.PC..LLIAELKRCDNV..FKLGLFSGL.W.LALF
Retrocopy HAI-NISLRTLGVPCIVLLIAELKRCDNVHIFKLGLFSGLCWILALF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_727 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000177076	1 retrocopy	retro_hsap_2378,
Gorilla gorilla	ENSGGOG00000003851	1 retrocopy	retro_ggor_1804,
Myotis lucifugus	ENSMLUG00000007595	1 retrocopy	retro_mluc_727 ,
Pongo abelii	ENSPPYG00000019192	1 retrocopy	retro_pabe_2147,