RetrogeneDB ID: retro_mluc_788

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429775:1644358..1645311(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000005471
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: PANK1
• Ensembl ID: ENSMLUG00000002554
• Aliases: None
• Description: None

Sequence

>retro_mluc_788
GTTGCTTATGGGAAAACCGGAATCCGAGATGTCCACCTGGAATTAAAAAACTTGACCATATGTGGACGCAAAGGGAACCT
GCACTTCATCCGCTTCCCCAGCTGTGCCATGCACATGTTCATTCAGATGGGCAAGGAAAAGAACTTCTCCAGCCTTCATA
CCACCCTCTGTGCCACGGGAGGTGGGGCTTTCAAGTTCGAAGAGGACTTCAGAATGATCACAGACCTGCAGCTCCACAAA
CTGGACGAACTGGATTGTCTGATTCAGGGCCTGCTCTACCTCGACTCCGTTGGCTTCAATGGCAAGCCAGAATGTTACTA
TTTTGAAAATCCCACAAATCCTGAATTGTGTCAAAAAAAGCCATACTGCCTTGATAACCCGTACCCTATGCTGCTGGTGA
ACATGGGCTCGGGGTCAGCATCCTAGCAGTGTACTCCAAGGACAACTATAAAAGAGTTGCAGGGACCAGTCTTGGAGGTG
GAACATTCCTAGGTCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTATGGAAATGGCAGCTAAAGGCGAC
AGCACCAATGTTGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCAATTTGGCCTTCAAGGATCTGTTGTAGC
ATCAAGCTTTGGCAACGTGATGAGTAAAGAAAAGCGAGAGTCCATCAGCAAGGAAGACCTCGCCCGAACCACGCTGGTCA
CCATCACCAACAACATTGGTTCCATTGCTCGGATGTGTGCACTGAATGAGAATATCGACAGAGTTGTGTTTGTTGGGAAT
TTTCTCAGAATCAATATGATTTCCATGAAGCTGCTAGCGTATGCCATGGATTTTTGGTCCAAGGGACAGCTGAAAGCTCT
GTTTTTGGAACATGAGGGTTACTTTGGAGCTGTTAGGGCACTGTTGGAACTATTCAAAGTGAATGATGACCAG

Alignment

ORF - retro_mluc_788 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.92 %
• Parental protein coverage: 53.09 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VAYGKTGIRDVHLELKNLTMCGRKGNLHFIRFPSCAMHMFIQMGSEKNFSSLHTTLCATGGGAFKFEEDF
          VAYGKTGIRDVHLELKNLT.CGRKGNLHFIRFPSCAMHMFIQMG.EKNFSSLHTTLCATGGGAFKFEEDF
Retrocopy VAYGKTGIRDVHLELKNLTICGRKGNLHFIRFPSCAMHMFIQMGKEKNFSSLHTTLCATGGGAFKFEEDF

Parental  RMIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSG-V
          RMI.DLQLHKLDELDCLIQGLLY.DSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSG.V
Retrocopy RMITDLQLHKLDELDCLIQGLLYLDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSG<V

Parental  SILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEAMEMAAKGDSTNVDKLVKDIYGGDYERFGLQ
          SILAVYSKDNYKRV.GTSLGGGTFLGLCCLLTGCETFEEAMEMAAKGDSTNVDKLVKDIYGGDYE.FGLQ
Retrocopy SILAVYSKDNYKRVAGTSLGGGTFLGLCCLLTGCETFEEAMEMAAKGDSTNVDKLVKDIYGGDYEQFGLQ

Parental  GSAVASSFGNMMSKEKRESISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLL
          GS.VASSFGN.MSKEKRESISKEDLAR.TLVTITNNIGSIARMCALNENIDRVVFVGNFLRINM.SMKLL
Retrocopy GSVVASSFGNVMSKEKRESISKEDLARTTLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMISMKLL

Parental  AYAMDFWSKGQLKALFLEHEGYFGAVGALLELFKVTDDQ
          AYAMDFWSKGQLKALFLEHEGYFGAV.ALLELFKV.DDQ
Retrocopy AYAMDFWSKGQLKALFLEHEGYFGAVRALLELFKVNDDQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_788 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000014668	1 retrocopy	retro_meug_877,
Myotis lucifugus	ENSMLUG00000002554	1 retrocopy	retro_mluc_788 ,