RetrogeneDB ID: retro_mluc_801

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429776:9184659..9185934(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HMMR
• Ensembl ID: ENSMLUG00000001674
• Aliases: None
• Description: None

Sequence

>retro_mluc_801
AGAATTCTAAGCCTTGAGTTGCTGAAACTTAGAAAAAAATGAGAAACTAAGATGAGAAGTATGATGGGGAACCAACAAGG
CACAGAGGTTGAACAGCAGGTCACCCAGAAGAATCTCAGAAAGTTTCAGGGGAAGTGGCACAGCTTGCGGGGAAACTCGT
TTCCATAGAGAAATAACAGATTGACAAAAAATCTGACACAGATAGACTCTTAGAATACACTGAAGAAATAAGTTGTGCCT
CGGATCAAAGTAGAAAAATACAAGCTAGATACTGCCCAGTTAGAAGAAATTTTAAGAGAAGAATCATGAAGTTTTAAGCC
TTAAGCAGTTTCTTGAGGAAAGCATTGTTACATTGTCTAAGCGAGTAAAAGACCTGATGGCTAAATGTCAGCTGCCATAA
AGAAAAAGAAGAGCTCATCAGCAGGGGCAGAGAACTGGATGGAAATCTACATTCTGTCATGCAAACCTAAAAAGAGAAGT
TTATTCTTGAAAAACAAGAACATGAAAAGCTACAACAAAAAGAATTGCAAATTGATTCACTTCTGAAACAGGAGAAGGCA
TTATCTTCTATTCTTCAGCAGAAGCTATGTTCTTTCAAGAGGAAACGATGAAAGAGAGGAATATCTTTGAGGAAGAATTA
AACAAGCTCTGGATGAGCTAGATAAACTACAGCAAAAAGGAGGGGCAAGCTGAAAAGCGGTTCAAACAATTGGGAGAAGA
AAGAAAAACCTAGGGCTGAAGAAGTGAAATGTCTAGAAGAAGATCTGAAGGTGAAAGAACCCGAACACTAGAAAAGTTAA
TGCTGCTCACACTCAGGCCACCTGCTGTGCAGAAAAGGTGCGATAGTAAGGTGCAGAACCTTGGAAATGTCACCGCTCCA
TTTGAAAGCTATAAAGCATTAACAGCTAGTGAGAGAGAAGATCTTAAGCTAGAGAACTTATCACTTAGGGAAAAAGTGAC
CAAGGCCAGGAAAAGCACAGAGCATGTTCAGCATCAGATATTGGAAACTGGGAGTTCAACTCAAGAACTATGCAAGGGTA
CTTCTAGATCTGCAGACCAGATCAGCTCTTAAAGAAGCAGAAATTAAAGAAATCGCAGTTTCTCGTCTACAAAAAATAAC
TTGATTTGGAGAACCAACTCAAGCAGCAAGGTGAAGACTTTAAGAGGCAGCTGGAAGAGGAAGAAGCAAGAAAAGCTGGA
AAAGAAAATACAATGGCAGAATTAACTGAGGAAATGAGTAAGGGGTGTCTCCTTTATGAAGAACTATATAATAAA

Alignment

ORF - retro_mluc_801 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.53 %
• Parental protein coverage: 59.78 %
• Number of stop codons detected: 8
• Number of frameshifts detected: 8

Retrocopy - Parental Gene Alignment:

Parental  RILSLELMKLRNKRETKMRSMMAKQQGMEVKLQATQKNLEESQGK-VTQLEGKLVSIQKEKTDEKSETEK
          RILSLEL.KLR.K.ETKMRSMM..QQG.EV..Q.TQKNL...QGK.V.QL.GKLVSI.K...D.KS.T..
Retrocopy RILSLELLKLRKK*ETKMRSMMGNQQGTEVEQQVTQKNLRKFQGK<VAQLAGKLVSIEK*QIDKKSDTDR

Parental  LLEYIEEISCASDQ-VEKYKLDIAQLEE-NLKEKNYEVLSLKQSLEENIVTLSEQVKD--LNANCQLLEK
          LLEY.EEISCASDQ.VEKYKLD.AQLEE.N.K........L...L...........K...LN..C....K
Retrocopy LLEYTEEISCASDQ>VEKYKLDTAQLEE<NFKRRIMKF*ALSSFLRKALLHCLSE*KT*WLNVSCH---K

Parental  EKGDLINRDRERDEHLNSEMQNLKEKLILEKQEHEKELQQKELQIDSLLQQEKEELSSSLQQKLCSF-QE
          EK..LI.R.RE.D..L.S.MQ..KEK.ILEKQEHEK.LQQKELQIDSLL.QEK..LSS.LQQKLCSF.QE
Retrocopy EKEELISRGRELDGNLHSVMQT*KEKFILEKQEHEK-LQQKELQIDSLLKQEKA-LSSILQQKLCSF<QE

Parental  DMMKEKNLFEEEL-KQALDELDKLQQK-EEKSEKLVKQLEEETKARAEELKLLEEKLKGKEAELEGSNAA
          ..MKE.N.FEEEL.KQALDELDKLQQK.E...EK..KQL.EE.K..............G...........
Retrocopy ETMKERNIFEEEL<KQALDELDKLQQK>EGQAEKRFKQLGEERKT*G*RSEMSRRRSEGERTRTLEKLML

Parental  HTQATLLLQERCNTAEQNLGNVTAQFESYKALTASEIEDLKLENSSLKEKVAKAEKSAQDVQHQILATES
          .T......Q.RC....QNLGNVTA.FESYKALTASE.EDLKLEN.SL.EKV.KA.KS...VQHQIL.T.S
Retrocopy LTLRPPAVQKRCDSKVQNLGNVTAPFESYKALTASEREDLKLENLSLREKVTKARKSTEHVQHQILETGS

Parental  SNQE-YARMLLDLQTRAALKEAEIKEITVSSLQKIS-DLENQLKQQGEDFKKQLEEEEARKAGKENTVAE
          S.QE.YAR.LLDLQTR.ALKEAEIKEI.VS.LQKI..DLENQLKQQGEDFK.QLEEEEARKAGKENT.AE
Retrocopy STQE>YARVLLDLQTRSALKEAEIKEIAVSRLQKIT>DLENQLKQQGEDFKRQLEEEEARKAGKENTMAE

Parental  LTEEMNKWRLLYEELYNK
          LTEEM.K..LLYEELYNK
Retrocopy LTEEMSKGCLLYEELYNK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_801 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000017192	1 retrocopy	retro_cfam_1298,
Callithrix jacchus	ENSCJAG00000015371	1 retrocopy	retro_cjac_3328,
Myotis lucifugus	ENSMLUG00000001674	1 retrocopy	retro_mluc_801 ,