RetrogeneDB ID: retro_mluc_81

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429973:251050..251650(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000029119
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000004317
• Aliases: None
• Description: None

Sequence

>retro_mluc_81
ATGTTCCTGGCGCGTCTGACGTCTCAGCTGCTGCGGGTCGCGCCCCAGGCAGGCCTCCGTGGGCCCTGGCCCGTCTCAGG
GGTGCGGGGAAGCAATGCCTGCAGGCCCCGCTACAGCATGCAACCAGCAGGCCCGAGTAGGGTTGCCGTCCTCCCGGGCA
AGGGGGTCCAGCTGGAGCTCGAGGAGATGCTGGTCCCCAGGAAGATGTCCATCAGTCCCCTGGAGAGCTGGCTGACCGCC
CACTACCTCCTGCCCAGACTGGATGCTGGGGTCCCAGGGACTGTGGCGCCGGCCCAGGCCTACGAGTGTCCGCCTGGCCA
GGTGGGGGGAGGAGCCGAGCAGGGGCGTGAGGAGGTGCAGGATGCACCCCAGATTCGGTGCAAAAACGTGCTGAAGATCC
GCCGGCGGAAGATGAACCATCATAAGTACCGCAAGCTGGTCAAGAGGACCCGATTTCTGAGGCGGAGGGTCCGGGAAGGA
CGCCTGAAACGGAAGCAGGTGAGGTTCGAGAAGGACCTGAAGCGCATCTGGCTGAAGGCGTGCCTGAAGGAAGCCCCTCC
CGGCTGGCAGACCCCCAAGATCTACCTCAGGGGCAAGTGA

Alignment

ORF - retro_mluc_81 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.41 %
• Parental protein coverage: 98.49 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ARLTSQLLRVAPRAGLRGLWPVSGVPGSHACRSRYSTQPAGPSRVAVLPGKGVQLELEEMLVPRKMSISP
          ARLTSQLLRVAP.AGLRG.WPVSGV.GS.ACR.RYS.QPAGPSRVAVLPGKGVQLELEEMLVPRKMSISP
Retrocopy ARLTSQLLRVAPQAGLRGPWPVSGVRGSNACRPRYSMQPAGPSRVAVLPGKGVQLELEEMLVPRKMSISP

Parental  LESWLTAHYLLPRLDAGVPGTVSPAQAYECPPGQVGGGAEQGREEVQDAPQIQCKNVLKIRRRKMNHHKY
          LESWLTAHYLLPRLDAGVPGTV.PAQAYECPPGQVGGGAEQGREEVQDAPQI.CKNVLKIRRRKMNHHKY
Retrocopy LESWLTAHYLLPRLDAGVPGTVAPAQAYECPPGQVGGGAEQGREEVQDAPQIRCKNVLKIRRRKMNHHKY

Parental  RKLVKRTRFLRRRVREGRLKRKQVRFEKDLKRIWLKAGLKEAPPGWQTPKIYLRGK
          RKLVKRTRFLRRRVREGRLKRKQVRFEKDLKRIWLKA.LKEAPPGWQTPKIYLRGK
Retrocopy RKLVKRTRFLRRRVREGRLKRKQVRFEKDLKRIWLKACLKEAPPGWQTPKIYLRGK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_81 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000034618	1 retrocopy	retro_cjac_1981,
Myotis lucifugus	ENSMLUG00000004317	1 retrocopy	retro_mluc_81 ,
Tursiops truncatus	ENSTTRG00000017044	1 retrocopy	retro_ttru_1186,