RetrogeneDB ID: retro_mluc_812

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429777:9110468..9111981(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023763
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000008318
• Aliases: None
• Description: None

Sequence

>retro_mluc_812
GAGGTACAGAAGCATTCTGTGCATACACTTGTGTTCAGGTCATTGAAGAGGGCCCATGACACGTTTGTAGCTGATAATGG
AAAACCTGTGCCTTTGGATGAAGAGAGTCACAAACGAAAAATGGCAATCAAGCTACGGAATGAGTATGGTCCTGTGTTGC
ACATGCCTACTTTGAAAGAAAATTCTAAAGAGAAGGGTCCTCAGAATGCATCAGATTCCTATGGTCATAAACAATATCCT
GCAAATCAAGGACAAGAAGTTGAATATTTGGTGACCGGTACACATCCCTATCCACCAGGACCTGGGGTTGCTTTAACAGC
AGATACTAAGATCCAAAGAATGCCAAGTGAGTCAGCTGCACAGTCCTTAGCATTACCTTCTTCTCAGGCCAGGGTTGATG
CAAATCGTGCTGCACCTGCTGGAGGCTCTGACCGCTCACAGCCTGCAGGGATGACTTTGGCTGTTATGGAGGGTGGCAAT
GCCAAGAACTCTGCACTCATGGCAAAGAAGGCCCCGACAATGCCAAAACCCCAGTGGCACCCGCCATGGAAACTCTACAG
GGTGATCAGTGGGCATCTTGGCTGGGTTCGATGTATTGCTGTGGAGCCTGGAAATCAGTGGTTTGTTACTGGATCTGCTG
ACAGAACTATAAAGATCTGGGACTTGGCTAGTGGCAAATTGAAACTGTCATTAACTGGGCACATTAGTACAGTTCGTGGT
GTGATAGTAAGCACGAGGAGCCCATACCTATTTTCCTGTGGAGAAGACAAACAGGTCAAATGCTGGGGATCTTGAGTATA
ATAAGGTTATAAAGGCACTATCATGGACATCTGAGTGCAGTGTATGGTTTTGATCTGCACCCAACAATTTGATGTGCTGG
TAACCTGGAGTCGTTGATTCACCTGCACGGGTTTGGGATGTGAGAACTAAAGCCAGTGTACATACATTATCCGGACATAC
AAATGCAGTTGCTACAGTGAGGTGTCAAGCTGCAGAACCACAAATTATTACTGGAAGCCACGACACTACAATACGATTAT
GGGATTTGGTGGCTGGAAAAACAAGAGTCACATTAACAAATCACAAAAAATCAGTGAGAGCTGTGGTGTTACATCCAAGA
CATTACACATTTGCATCTGGTTCTCCAGATAACATAAAACAGTGGAAATTCCCTGATGGAAGTTTCATTCAAAATCTTTC
TGGTCATAACGCTATTATTAACACACTGACAGTAAATTCTGATGGAGTGCTCGTGTCTGGAGCTGACAATGGAACCATGC
ATCTTTGGGATTGGAGAACTGGCTACAATTTCCAGAGAGTTCATGCAGCTGTGCAGCCCGGGTCTTTGGACAGTGAATCA
GGAATATTTGCTTGTGCTTTTGATCAGTCTGAAAGTCGGTTACTAACGGCTGAAGCTGATAAAACCATTAAAGTGTACAG
AGAGGATGATACAGCGACAGAAGAAACTCATCCAGTCAGCTGGAAACCAGAAATTATCAAGAGAAAGAGATTT

Alignment

ORF - retro_mluc_812 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.05 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  EVQKHSVHTLVFRSLKRTHDMFVADNGKPVPLDEESHKRKMAIKLRNEYGPVLHMPTLKENYKEKGPQNA
          EVQKHSVHTLVFRSLKR.HD.FVADNGKPVPLDEESHKRKMAIKLRNEYGPVLHMPTLKEN.KEKGPQNA
Retrocopy EVQKHSVHTLVFRSLKRAHDTFVADNGKPVPLDEESHKRKMAIKLRNEYGPVLHMPTLKENSKEKGPQNA

Parental  SDSYGHKQYPANQGQEVEYLVTGTHPYPPGPGVALTADTKIQRMPSESAAQSLAVALPSSQARADANRAA
          SDSYGHKQYPANQGQEVEYLVTGTHPYPPGPGVALTADTKIQRMPSESAAQSLA..LPSSQAR.DANRAA
Retrocopy SDSYGHKQYPANQGQEVEYLVTGTHPYPPGPGVALTADTKIQRMPSESAAQSLA--LPSSQARVDANRAA

Parental  PAGGSDRSQPAGMTLAVMEGGNAKNSALMAKKAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWF
          PAGGSDRSQPAGMTLAVMEGGNAKNSALMAKKAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWF
Retrocopy PAGGSDRSQPAGMTLAVMEGGNAKNSALMAKKAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWF

Parental  VTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSARSPYLFSCGEDKQVKCW-DLEYNKVI-RHYHGH
          VTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVS.RSPYLFSCGEDKQVKCW.DLEYNKVI.RHYHGH
Retrocopy VTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCW>DLEYNKVI>RHYHGH

Parental  LSAVYGLDLHPTI-DVLVTCSR-DSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIR
          LSAVYG.DLHPTI.DVLVT.SR.DS.AR.WDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIR
Retrocopy LSAVYGFDLHPTI>DVLVTWSR>DSPARVWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIR

Parental  LWDLVAGKTRVTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDGSFIQNLSGHNAIINTLTVNSDG
          LWDLVAGKTRVTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDGSFIQNLSGHNAIINTLTVNSDG
Retrocopy LWDLVAGKTRVTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDGSFIQNLSGHNAIINTLTVNSDG

Parental  VLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACAFDQSESRLLTAEADKTIKVYREDDTA
          VLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACAFDQSESRLLTAEADKTIKVYREDDTA
Retrocopy VLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACAFDQSESRLLTAEADKTIKVYREDDTA

Parental  TEETHPVSWKPEIIKRKRF
          TEETHPVSWKPEIIKRKRF
Retrocopy TEETHPVSWKPEIIKRKRF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_812 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000001013	1 retrocopy	retro_chof_579,
Myotis lucifugus	ENSMLUG00000008318	1 retrocopy	retro_mluc_812 ,
Ornithorhynchus anatinus	ENSOANG00000005295	1 retrocopy	retro_oana_80,