RetrogeneDB ID: retro_mluc_843

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429779:8190161..8192069(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025481
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ZNF143
• Ensembl ID: ENSMLUG00000000213
• Aliases: None
• Description: None

Sequence

>retro_mluc_843
ATGTTGTTAGCCCAAATAAATTGAGATTCTCAGGGAATGACAGAGTTTCCTGGAGGAGGAATGGAGGCTCAGCATGTTAC
CCTGTGCCTGACAGAGGCAGTAACTATGGCAGATGCTGACAATTTAGAAAATATGGAAGGTGTAAGCTTACAAGCAGTAA
CACTTGCAGATGGTTCTACGACTTATATACAGCACAATTCTAAAGATGGAAAACTCATAGATGGCCAGGTCATTCAGTTG
GAAGACGGTTCTGCTGCCTATGTTCAACATGTACCCATACCTAAAAGTTGGGACAGTTTACGTCTAGAGGATGGCCAAGC
CGTGCAGTTAGAAGATGAAACTACAGCCTTTATTCACCATACCTCCAAAGATAGTTGTGACCAGAGCGCATTACAGGCAG
TTCAGCTGGAAGATGGCACCACGGCTTACATCCACCAAGCAGTGCAAGTCCCACAGTCTGATACCATCCTACCAATTCAG
GCTGATGGTACAGTGGCAGGTCTGCATACTGGGGATGCCACGATTGATCCTGAAACCATCAGTGCTTTGGAACAGTATGC
AAAGGTATCCATTGAGGGAAGTGAAAGTATAACAGGTACTGGAATGATTGGAGAAAATGAGCAAGAGAAAAAAATGCAGA
CTGTCTTACAAGGACATGCAGCAAGACTAACTGCTAAATCTCAACAGAGTGGAGAGAAGGCGTTTCGATGTGAATATGGT
GGATGTGGAAAATTATATACAACAGCTCATCATCTTAAGGTTCATGAGAGGTCACACACGGGAGACCGGCCTTATCAGTG
TGAGCATCCTGGCTGTGGGAAAGCATTTGCAACAGGTTATGGATTAAAAAGTCATGTCAGAACTCACACAGGAGAAAAGC
CATATCGGTGTTCAGAAGATCATTGTACTAAATCCTTTAAAACTTCAGGAGATCTACAGAAACATATCAGAACTCATACA
GGAAAAAGACCCTTTAAATGTCACTTTGAAGGCTGTGGTCGGTCTTTCACAACATCAAGTATCAGAAAAGTGCATATTAG
GACACACACAGGAGAAAGACCTTATTACTGCACAGAACCAGGATGTGGAAGGGCATTTGCCAGTGCAACCAATTATAAAA
ACCATGTGAGGATACACACAGGGGAAAAGCCATATGTTTGTACAGTCCCTGGGTGTGATAAAAGGTTTACAGAATATTCT
AGTTTGTATAAACATCATGTTGCTCACACTCATTCCAAACCTTACAACGGTAAACACCGTGGGAAGACATATAAGCAGAT
CTCCACGCTGGCCATGCACAAACGGACCGCCCACAACGACACAGAGCCAATCGAGGAGGAGCAGGAAGCCGCCTTTGAGC
CTCCTCCAGGTCAAGGTGAAGATGTTCTTAAAGGGCCCCAGATCACATATGTCACAGGTGTAGAAGGGGATGATGTTGTG
TCTACACAAGTAGCCACGGTAACCCAGTCTGGGTTGAGTCAACAGGTTACACTCATATCCCAGGATGGGACTCAGCATGT
CAACATATCTCAAGCTCACATGCAAGCCATTGGCAATACCATCACAATGGTAACGCAGGATGGCACGCTCATCACAGTCC
CTGCTCATGATGCAGTCATCTCCTCAGCAGGGACACACTCTGTTGCTATGGTAACTGCCGAGGGTACAGAAGGGCAGCAG
GTTGCAGTTGAGGCTCAGGACTTGGCAGCATTCCACACTGCATCGTCAGAAATGGGGCACCAGCAGCACAGCCATCACTT
AGTAACCACAGAAACTAGACCTCTGACCTTAGTGGCAACATCCAATGGTACCCAGATTGCAGTTCAGCTTGGAGAACAGC
CATCTCTGGAAGAAGCTATCAGAATAGCATCCAGGATCCAACAAGGAGAAACACCAGGGCTGGATGAC

Alignment

ORF - retro_mluc_843 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.92 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MLLAQINRDSQGMTEFPGGGMEAQHVTLCLTEAVTVADADNLENMEGVSLQAVTLADGSTAYIQHNSKDG
          MLLAQIN.DSQGMTEFPGGGMEAQHVTLCLTEAVT.ADADNLENMEGVSLQAVTLADGST.YIQHNSKDG
Retrocopy MLLAQIN*DSQGMTEFPGGGMEAQHVTLCLTEAVTMADADNLENMEGVSLQAVTLADGSTTYIQHNSKDG

Parental  KLIDGQVIQLEDGSAAYVQHVPIPKSTGDSLRLEDGQAVQLEDGTTAFIHHTSKDSYDQSALQAVQLEDG
          KLIDGQVIQLEDGSAAYVQHVPIPKS..DSLRLEDGQAVQLED.TTAFIHHTSKDS.DQSALQAVQLEDG
Retrocopy KLIDGQVIQLEDGSAAYVQHVPIPKSW-DSLRLEDGQAVQLEDETTAFIHHTSKDSCDQSALQAVQLEDG

Parental  TTAYIHHAVQVPQSDTILAIQADGTVAGLHTGDATIDPETISALEQYAAKVSIDGSESITGTGMIGENEQ
          TTAYIH.AVQVPQSDTIL.IQADGTVAGLHTGDATIDPETISALEQYA.KVSI.GSESITGTGMIGENEQ
Retrocopy TTAYIHQAVQVPQSDTILPIQADGTVAGLHTGDATIDPETISALEQYA-KVSIEGSESITGTGMIGENEQ

Parental  EKKMQIVLQGHAARVTAKSQQSGEKAFRCEYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHPGCGKAFAT
          EKKMQ.VLQGHAAR.TAKSQQSGEKAFRCEY.GCGKLYTTAHHLKVHERSHTGDRPYQCEHPGCGKAFAT
Retrocopy EKKMQTVLQGHAARLTAKSQQSGEKAFRCEYGGCGKLYTTAHHLKVHERSHTGDRPYQCEHPGCGKAFAT

Parental  GYGLKSHVRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCHFEGCGRSFTTSNIRKVHIRT
          GYGLKSHVRTHTGEKPYRCSED.CTKSFKTSGDLQKHIRTHTG.RPFKCHFEGCGRSFTTS.IRKVHIRT
Retrocopy GYGLKSHVRTHTGEKPYRCSEDHCTKSFKTSGDLQKHIRTHTGKRPFKCHFEGCGRSFTTSSIRKVHIRT

Parental  HTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKHHVVHTHSKPYNCN
          HTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKHHV.HTHSKPYN..
Retrocopy HTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKHHVAHTHSKPYNGK

Parental  HCGKTYKQISTLAMHKRTAHNDTEPIEEEQEAFFEPPPGQGEDVLKGPQITYVTGVEGDDVVSTQVATVT
          H.GKTYKQISTLAMHKRTAHNDTEPIEEEQEA.FEPPPGQGEDVLKGPQITYVTGVEGDDVVSTQVATVT
Retrocopy HRGKTYKQISTLAMHKRTAHNDTEPIEEEQEAAFEPPPGQGEDVLKGPQITYVTGVEGDDVVSTQVATVT

Parental  QSGLSQQVTLISQDGTQHVNISQADMQAIGNTITMVTQDGTPITVPAHDAVISSAGTHSVAMVTAEGTEG
          QSGLSQQVTLISQDGTQHVNISQA.MQAIGNTITMVTQDGT.ITVPAHDAVISSAGTHSVAMVTAEGTEG
Retrocopy QSGLSQQVTLISQDGTQHVNISQAHMQAIGNTITMVTQDGTLITVPAHDAVISSAGTHSVAMVTAEGTEG

Parental  QQVAIVAQDLAAFHTASSEMGHQQHSHHLVTTETRPLTLVATSNGTQIAVQLGEQPSLEEAIRIASRIQQ
          QQVA..AQDLAAFHTASSEMGHQQHSHHLVTTETRPLTLVATSNGTQIAVQLGEQPSLEEAIRIASRIQQ
Retrocopy QQVAVEAQDLAAFHTASSEMGHQQHSHHLVTTETRPLTLVATSNGTQIAVQLGEQPSLEEAIRIASRIQQ

Parental  GETPGLDD
          GETPGLDD
Retrocopy GETPGLDD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_843 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000000213	1 retrocopy	retro_mluc_843 ,