RetrogeneDB ID: retro_mluc_937

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429784:14018778..14019085(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SLC38A6
• Ensembl ID: ENSMLUG00000002362
• Aliases: None
• Description: None

Sequence

>retro_mluc_937
ATGAAGGTGCCCTGGGGGATCATCAACATGAAGATGGGCTGGTACATCTCTTCCCAGCAGCCTGAGGAAGTGGAGGTGGA
AGAGTTGAGCCTGTTTCTAAGCAACAAACTCCACAGACAGAGATCCCCAGGTGTTTCATTTGGTTTCTCAGTGTTTAATT
TGGTAAATGCCATCATGGGAGTGGCATTTTTGGCTTAGCTTATGTATGGCTCATACCGATATCCTTGGATTTAGTTTCTT
GTTGCTGGTAAATGCTCACCTGGCTTCATTCTTAGTCTATCTCCTGCTTAGTATGTGTACTCAGACA

Alignment

ORF - retro_mluc_937 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.9 %
• Parental protein coverage: 99.06 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MEAPWGVINVQPGCYVSSQQPEEAEAQAEELSPLLSNELHRQGSPGVSYGFSVFNLMNAIM-GSGILGLA
          M..PWG.IN...G.Y.SSQQPEE.E...EELS..LSN.LHRQ.SPGVS.GFSVFNL.NAIM.GSGI.GLA
Retrocopy MKVPWGIINMKMGWYISSQQPEEVEV--EELSLFLSNKLHRQRSPGVSFGFSVFNLVNAIM<GSGIFGLA

Parental  FV-MAHTGILGFSFLLLIVALLASFSVHLLLSMCIQT
          .V.MAHT.ILGFSFLLL..A.LASF.V.LLLSMC.QT
Retrocopy YV<MAHTDILGFSFLLLVNAHLASFLVYLLLSMCTQT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_937 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000002362	1 retrocopy	retro_mluc_937 ,