RetrogeneDB ID:

retro_mluc_952

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429785:2996465..2999180(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000005599
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000000159
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_952
TCTAGTTTTGGAGCCTGTGATGGGGCAAGTTCTTGGGATTCCTACAGTGACCACTTCGCCATTGAGACCTGCAAGGAGAC
AGATATGCTGAACTACCTCATCGAGTGTTTTGACCGAGTTGGAATAGAGGAACAAAAAGCACCTAAGATGTGCAGCCAGC
CAGCGGTCAGCCAGCTTCTGAGCAACATCCGCTCACAGTGCATATCCCACACTGCGTTAGTGCTGCAAGGCTCCCTCACC
CAGCCCAGGTCCATGCAGCGGCCCTCCTTCCTGGTGCCGTACATGCTGAGGAGGAACCTCCCATACGGCTTCATTCAAGA
GCTGGTGAGAACCACTCACCAGGATGAAGAAGTGTTCAGGCAGATCTTTATCCCCATTTTGCAAGGCCTGGCGCTTGCTG
CCAAAGAGTGCTCCCTTGAGAGTGACTACTTTAAATACCCCCTCATGGCTTTGGGTGAGCTCTGCAAAACCAAGTTTGAG
AAGACACACCCCGTGTGCAATTTGGTCGCTTCCTTGCCGTTGTGGTTGCCTGAGTCCCTCAGCCCTGGGTCCGGGCGGGA
GCTGCAGAGACTCTCCTATTTGGGGTCTTTTTTTAGCTTCTCAGTCTTCGCAGAAGATGATGCTAAAGTGGTTGAAAAAT
ATTTCTCAGGGCCTGCTATTACCCTGGAAAATACTCGCGTGGTTAGCCAATCATTGCAGCATTACTTGGAGCTGGGAAGG
CAAGAGCTTTTCAAGATTCTGCATAGCATTCTGTTGAATGGTGAAACCCGGGAGGCTGCCCTTGGTTACATGGCGGCTGT
CGTCAATGCCAATATGAAAAAGGCACAGATGCAGGCAGATGACAGATTGGTTTCTACAGATGGATTTATGCTGAATTTTC
TCTGGGTGCTGCAGCAGCTAAGTACAAAGATCAAGTTAGAGACGGTTGACCCCACGTATATATTCCACCCGAGGTGTCGG
ATCACTCTGCCCACCGATGAGACCAGAGTGAACGCCACGATGGAGGATGTGAAGGACTGGCTGGCGGAACTCTATGGAGA
TCAGCCTCCCTTTTCTGAGCCGAAATTCCCTACGGAATGCTTCTTTCTTACGCTGCACGCTCACCACCTCTCTATCCTGC
CAAGTTGCCGTCGCTATATCCACAGACTCTGGGCCATCCGGGAGCTCAAGAGAACCGTGGAAGATTTGGAAAATAACGAA
AGCCAATGGAAAGATTCCCCCCTGGCAACTAGACACCGTGAAATGCTGAAGCGCTGCAAAACTCAGCTTAAGAAACTGGT
ACGATGCAAGGCCTGCGCTGACGCTGGTTTACTTGACGAGAGCTTCCTGCGAAGATGTCTGAATTTTTATGGCCTTCTCA
CTCAGCTGCTGCTCCGCATCCTGGACCCTGCCTACCCCGATGTAACACTGCCTTTAAGTTCAGACGTCCCCAAGGCGTTT
GCAGCATTGCCTGAGTTTTATGTAGAAGATATCGCTGAATTTTTATTTTTTATTGTACAATACTCGCCTCAGGTGCTCTA
CGAGCCCTGCACTCAGGATATTGTGATGTTCCTCGTTGTGATGTTGTGCAACCAGAACTACATCCGCAATCCGTACCTGG
TGGCCAAACTGGTAGAAGTCGTGTTTATGACCAACCCTGCTGTTCAGCCACGAACGCAGAAGTTCTTTGAAATGATTGAG
AACCATCCTCTCTCCACCAAACTGTTGGTCCCTTCCCTGATGAAGTTTTATACAGATGTCGAGCATACCGGAGCGACCAG
CGAGTTCTATGACAAGTTCACCATTCGCTACCACATTAGCACCATCTTTAAAAGCCTTTGGCAGAACATAGCTCACCACG
GCACCTTCATGGAGGAGTTCAACTCTGGGAAGCAGTTTGTTCGCTATATAAACATGCTGATCAATGACACGACGTTTCTG
CTCGATGAAAGTCTGGAGTCTCTGAAGCGGATCCACAAGGTGCAAGAGGAGATGAAGAACAAAGAGCGGTGGGAGCAGCT
GCCCCGGGACCAGCAGCAGGCCCGGCAGTCCCAGCTGGCTCAGGACGAGCGGGTGTCACGCTCCTATCTTGCCCTGGCAG
CGGAAACCCTGGACATGTTCCACATCCTCACCAAGCAGGTCCAGAAGCCCTTCCTCAGGCCAGAACTTGGACCCCGATTG
GCTGCAATGCTGAACTTTAATCTTCAGCAACTCTGTGGTCCCAAGTGCCGTGACCTGAAAGTCGAAAACCCTGAGAAATA
TGGCTTTGAACCAAAGAAGCTGTTGGACCAACTGACAGATATTTACTTGCAGCTGGATTGTGCGTGGTTCGCTAAAGCCA
TCGCTGACGACCAGAGATCCTACAGCAAAGAGTTGTTTGAAGAAGTTATTTCGAAGATGCGGAAAGCGAGGATCAAATCC
ACAATCGCGATAGAGAAGTTTAAACTCCTCGCCGAAAAGGTGGAGGAGATGGTGGCCAAGAACGCGCGCGCCGAGATCGA
CTACAGCGATGCTCCGGACGAGTTCCGAGACCCTCTGATGGACACCCTGATGACTGACCCCGTGCGGCTGCCCTCCGGCA
CCATCATGGACCGCTCCATCATTCTGCGGCACCTGCTCAACTCCCCCACAGACCCCTTCAACCGGCAGACGCTGACCGAG
AGCATGCTGGAGCCAGTGCCAGAACTGAAAGAACAGATTCACGCCTGGATGAGAGAGAAGCAGAACAGTGATCAT

ORF - retro_mluc_952 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 97.35 %
Parental protein coverage: 66.76 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalSSFGACGGAGSWDSYSDHFAIETCKETDMLNYLIECFDRVGIEEKKAPKMCSQPAVSQLLSNIRSQCISH
SSFGAC.GA.SWDSYSDHFAIETCKETDMLNYLIECFDRVGIEE.KAPKMCSQPAVSQLLSNIRSQCISH
RetrocopySSFGACDGASSWDSYSDHFAIETCKETDMLNYLIECFDRVGIEEQKAPKMCSQPAVSQLLSNIRSQCISH
ParentalTALVLQGSLTQPRSMQQPSFLVPYMLCRNLPYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLE
TALVLQGSLTQPRSMQ.PSFLVPYML.RNLPYGFIQELVRTTHQDEEVF.QIFIPILQGLALAAKECSLE
RetrocopyTALVLQGSLTQPRSMQRPSFLVPYMLRRNLPYGFIQELVRTTHQDEEVFRQIFIPILQGLALAAKECSLE
ParentalSDYFKYPLMALGELCETKFGKTHPVCNLVASLPLWLPKSLSPGSGRELQRLSYLGSFFSFSVFAEDDAKV
SDYFKYPLMALGELC.TKF.KTHPVCNLVASLPLWLP.SLSPGSGRELQRLSYLGSFFSFSVFAEDDAKV
RetrocopySDYFKYPLMALGELCKTKFEKTHPVCNLVASLPLWLPESLSPGSGRELQRLSYLGSFFSFSVFAEDDAKV
ParentalVEKYFSGPAITLENTRVVSQSLQHYLELGRQELFKILHSILLNGETREAALGYMAAVVNANMKKAQMQTD
VEKYFSGPAITLENTRVVSQSLQHYLELGRQELFKILHSILLNGETREAALGYMAAVVNANMKKAQMQ.D
RetrocopyVEKYFSGPAITLENTRVVSQSLQHYLELGRQELFKILHSILLNGETREAALGYMAAVVNANMKKAQMQAD
ParentalDRLVSTDGFMLNFLWVLQQLSTKIKLETVDPTYIFHPRCRITLPTDETRVNATMEDVKDWLAELYGDQPP
DRLVSTDGFMLNFLWVLQQLSTKIKLETVDPTYIFHPRCRITLPTDETRVNATMEDVKDWLAELYGDQPP
RetrocopyDRLVSTDGFMLNFLWVLQQLSTKIKLETVDPTYIFHPRCRITLPTDETRVNATMEDVKDWLAELYGDQPP
ParentalFSEPKFPTECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRTVEDLKNNESQWKDSPLATRHREMLKRCK
FSEPKFPTECFFLTLHAHHLSILPSCRRYI.RL.AIREL.RTVEDL.NNESQWKDSPLATRHREMLKRCK
RetrocopyFSEPKFPTECFFLTLHAHHLSILPSCRRYIHRLWAIRELKRTVEDLENNESQWKDSPLATRHREMLKRCK
ParentalTQLKKLVRCKACADAGLLDESFLRRCLNFYGLLIQLLLRILDPAYPDVTLPLSSDVPKAFAALPEFYVED
TQLKKLVRCKACADAGLLDESFLRRCLNFYGLL.QLLLRILDPAYPDVTLPLSSDVPKAFAALPEFYVED
RetrocopyTQLKKLVRCKACADAGLLDESFLRRCLNFYGLLTQLLLRILDPAYPDVTLPLSSDVPKAFAALPEFYVED
ParentalIAEFLFFIVQYSPQVLYEPCTQDIVMFLVVMLCNQNYIRNPYLVAKLVEVMFMTNPAVQPRTQKFFEMIE
IAEFLFFIVQYSPQVLYEPCTQDIVMFLVVMLCNQNYIRNPYLVAKLVEV.FMTNPAVQPRTQKFFEMIE
RetrocopyIAEFLFFIVQYSPQVLYEPCTQDIVMFLVVMLCNQNYIRNPYLVAKLVEVVFMTNPAVQPRTQKFFEMIE
ParentalNHPLSTKLLVPSLMKFYTVDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQFVRY
NHPLSTKLLVPSLMKFYT.DVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQFVRY
RetrocopyNHPLSTKLLVPSLMKFYT-DVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQFVRY
ParentalINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWEQLPRDQQQARQSQLAQDERVSRSYLALATETVDM
INMLINDTTFLLDESLESLKRIH.VQEEMKNKE.WEQLPRDQQQARQSQLAQDERVSRSYLALA.ET.DM
RetrocopyINMLINDTTFLLDESLESLKRIHKVQEEMKNKERWEQLPRDQQQARQSQLAQDERVSRSYLALAAETLDM
ParentalFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCAR
FHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCA.
RetrocopyFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCAW
ParentalFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAEKVEEIVAKNARAEIDYSDAPDEFRDPL
FAKAIADDQRSYSKELFEEVISKMRKA.IKSTIAIEKFKLLAEKVEE.VAKNARAEIDYSDAPDEFRDPL
RetrocopyFAKAIADDQRSYSKELFEEVISKMRKARIKSTIAIEKFKLLAEKVEEMVAKNARAEIDYSDAPDEFRDPL
ParentalMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIHAWMREKQNSDH
MDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIHAWMREKQNSDH
RetrocopyMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIHAWMREKQNSDH

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_952 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Myotis lucifugus ENSMLUG00000000159 1 retrocopy
retro_mluc_952 ,


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