RetrogeneDB ID: retro_mluc_952

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429785:2996465..2999180(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000005599
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000000159
• Aliases: None
• Description: None

Sequence

>retro_mluc_952
TCTAGTTTTGGAGCCTGTGATGGGGCAAGTTCTTGGGATTCCTACAGTGACCACTTCGCCATTGAGACCTGCAAGGAGAC
AGATATGCTGAACTACCTCATCGAGTGTTTTGACCGAGTTGGAATAGAGGAACAAAAAGCACCTAAGATGTGCAGCCAGC
CAGCGGTCAGCCAGCTTCTGAGCAACATCCGCTCACAGTGCATATCCCACACTGCGTTAGTGCTGCAAGGCTCCCTCACC
CAGCCCAGGTCCATGCAGCGGCCCTCCTTCCTGGTGCCGTACATGCTGAGGAGGAACCTCCCATACGGCTTCATTCAAGA
GCTGGTGAGAACCACTCACCAGGATGAAGAAGTGTTCAGGCAGATCTTTATCCCCATTTTGCAAGGCCTGGCGCTTGCTG
CCAAAGAGTGCTCCCTTGAGAGTGACTACTTTAAATACCCCCTCATGGCTTTGGGTGAGCTCTGCAAAACCAAGTTTGAG
AAGACACACCCCGTGTGCAATTTGGTCGCTTCCTTGCCGTTGTGGTTGCCTGAGTCCCTCAGCCCTGGGTCCGGGCGGGA
GCTGCAGAGACTCTCCTATTTGGGGTCTTTTTTTAGCTTCTCAGTCTTCGCAGAAGATGATGCTAAAGTGGTTGAAAAAT
ATTTCTCAGGGCCTGCTATTACCCTGGAAAATACTCGCGTGGTTAGCCAATCATTGCAGCATTACTTGGAGCTGGGAAGG
CAAGAGCTTTTCAAGATTCTGCATAGCATTCTGTTGAATGGTGAAACCCGGGAGGCTGCCCTTGGTTACATGGCGGCTGT
CGTCAATGCCAATATGAAAAAGGCACAGATGCAGGCAGATGACAGATTGGTTTCTACAGATGGATTTATGCTGAATTTTC
TCTGGGTGCTGCAGCAGCTAAGTACAAAGATCAAGTTAGAGACGGTTGACCCCACGTATATATTCCACCCGAGGTGTCGG
ATCACTCTGCCCACCGATGAGACCAGAGTGAACGCCACGATGGAGGATGTGAAGGACTGGCTGGCGGAACTCTATGGAGA
TCAGCCTCCCTTTTCTGAGCCGAAATTCCCTACGGAATGCTTCTTTCTTACGCTGCACGCTCACCACCTCTCTATCCTGC
CAAGTTGCCGTCGCTATATCCACAGACTCTGGGCCATCCGGGAGCTCAAGAGAACCGTGGAAGATTTGGAAAATAACGAA
AGCCAATGGAAAGATTCCCCCCTGGCAACTAGACACCGTGAAATGCTGAAGCGCTGCAAAACTCAGCTTAAGAAACTGGT
ACGATGCAAGGCCTGCGCTGACGCTGGTTTACTTGACGAGAGCTTCCTGCGAAGATGTCTGAATTTTTATGGCCTTCTCA
CTCAGCTGCTGCTCCGCATCCTGGACCCTGCCTACCCCGATGTAACACTGCCTTTAAGTTCAGACGTCCCCAAGGCGTTT
GCAGCATTGCCTGAGTTTTATGTAGAAGATATCGCTGAATTTTTATTTTTTATTGTACAATACTCGCCTCAGGTGCTCTA
CGAGCCCTGCACTCAGGATATTGTGATGTTCCTCGTTGTGATGTTGTGCAACCAGAACTACATCCGCAATCCGTACCTGG
TGGCCAAACTGGTAGAAGTCGTGTTTATGACCAACCCTGCTGTTCAGCCACGAACGCAGAAGTTCTTTGAAATGATTGAG
AACCATCCTCTCTCCACCAAACTGTTGGTCCCTTCCCTGATGAAGTTTTATACAGATGTCGAGCATACCGGAGCGACCAG
CGAGTTCTATGACAAGTTCACCATTCGCTACCACATTAGCACCATCTTTAAAAGCCTTTGGCAGAACATAGCTCACCACG
GCACCTTCATGGAGGAGTTCAACTCTGGGAAGCAGTTTGTTCGCTATATAAACATGCTGATCAATGACACGACGTTTCTG
CTCGATGAAAGTCTGGAGTCTCTGAAGCGGATCCACAAGGTGCAAGAGGAGATGAAGAACAAAGAGCGGTGGGAGCAGCT
GCCCCGGGACCAGCAGCAGGCCCGGCAGTCCCAGCTGGCTCAGGACGAGCGGGTGTCACGCTCCTATCTTGCCCTGGCAG
CGGAAACCCTGGACATGTTCCACATCCTCACCAAGCAGGTCCAGAAGCCCTTCCTCAGGCCAGAACTTGGACCCCGATTG
GCTGCAATGCTGAACTTTAATCTTCAGCAACTCTGTGGTCCCAAGTGCCGTGACCTGAAAGTCGAAAACCCTGAGAAATA
TGGCTTTGAACCAAAGAAGCTGTTGGACCAACTGACAGATATTTACTTGCAGCTGGATTGTGCGTGGTTCGCTAAAGCCA
TCGCTGACGACCAGAGATCCTACAGCAAAGAGTTGTTTGAAGAAGTTATTTCGAAGATGCGGAAAGCGAGGATCAAATCC
ACAATCGCGATAGAGAAGTTTAAACTCCTCGCCGAAAAGGTGGAGGAGATGGTGGCCAAGAACGCGCGCGCCGAGATCGA
CTACAGCGATGCTCCGGACGAGTTCCGAGACCCTCTGATGGACACCCTGATGACTGACCCCGTGCGGCTGCCCTCCGGCA
CCATCATGGACCGCTCCATCATTCTGCGGCACCTGCTCAACTCCCCCACAGACCCCTTCAACCGGCAGACGCTGACCGAG
AGCATGCTGGAGCCAGTGCCAGAACTGAAAGAACAGATTCACGCCTGGATGAGAGAGAAGCAGAACAGTGATCAT

Alignment

ORF - retro_mluc_952 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.35 %
• Parental protein coverage: 66.76 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SSFGACGGAGSWDSYSDHFAIETCKETDMLNYLIECFDRVGIEEKKAPKMCSQPAVSQLLSNIRSQCISH
          SSFGAC.GA.SWDSYSDHFAIETCKETDMLNYLIECFDRVGIEE.KAPKMCSQPAVSQLLSNIRSQCISH
Retrocopy SSFGACDGASSWDSYSDHFAIETCKETDMLNYLIECFDRVGIEEQKAPKMCSQPAVSQLLSNIRSQCISH

Parental  TALVLQGSLTQPRSMQQPSFLVPYMLCRNLPYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLE
          TALVLQGSLTQPRSMQ.PSFLVPYML.RNLPYGFIQELVRTTHQDEEVF.QIFIPILQGLALAAKECSLE
Retrocopy TALVLQGSLTQPRSMQRPSFLVPYMLRRNLPYGFIQELVRTTHQDEEVFRQIFIPILQGLALAAKECSLE

Parental  SDYFKYPLMALGELCETKFGKTHPVCNLVASLPLWLPKSLSPGSGRELQRLSYLGSFFSFSVFAEDDAKV
          SDYFKYPLMALGELC.TKF.KTHPVCNLVASLPLWLP.SLSPGSGRELQRLSYLGSFFSFSVFAEDDAKV
Retrocopy SDYFKYPLMALGELCKTKFEKTHPVCNLVASLPLWLPESLSPGSGRELQRLSYLGSFFSFSVFAEDDAKV

Parental  VEKYFSGPAITLENTRVVSQSLQHYLELGRQELFKILHSILLNGETREAALGYMAAVVNANMKKAQMQTD
          VEKYFSGPAITLENTRVVSQSLQHYLELGRQELFKILHSILLNGETREAALGYMAAVVNANMKKAQMQ.D
Retrocopy VEKYFSGPAITLENTRVVSQSLQHYLELGRQELFKILHSILLNGETREAALGYMAAVVNANMKKAQMQAD

Parental  DRLVSTDGFMLNFLWVLQQLSTKIKLETVDPTYIFHPRCRITLPTDETRVNATMEDVKDWLAELYGDQPP
          DRLVSTDGFMLNFLWVLQQLSTKIKLETVDPTYIFHPRCRITLPTDETRVNATMEDVKDWLAELYGDQPP
Retrocopy DRLVSTDGFMLNFLWVLQQLSTKIKLETVDPTYIFHPRCRITLPTDETRVNATMEDVKDWLAELYGDQPP

Parental  FSEPKFPTECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRTVEDLKNNESQWKDSPLATRHREMLKRCK
          FSEPKFPTECFFLTLHAHHLSILPSCRRYI.RL.AIREL.RTVEDL.NNESQWKDSPLATRHREMLKRCK
Retrocopy FSEPKFPTECFFLTLHAHHLSILPSCRRYIHRLWAIRELKRTVEDLENNESQWKDSPLATRHREMLKRCK

Parental  TQLKKLVRCKACADAGLLDESFLRRCLNFYGLLIQLLLRILDPAYPDVTLPLSSDVPKAFAALPEFYVED
          TQLKKLVRCKACADAGLLDESFLRRCLNFYGLL.QLLLRILDPAYPDVTLPLSSDVPKAFAALPEFYVED
Retrocopy TQLKKLVRCKACADAGLLDESFLRRCLNFYGLLTQLLLRILDPAYPDVTLPLSSDVPKAFAALPEFYVED

Parental  IAEFLFFIVQYSPQVLYEPCTQDIVMFLVVMLCNQNYIRNPYLVAKLVEVMFMTNPAVQPRTQKFFEMIE
          IAEFLFFIVQYSPQVLYEPCTQDIVMFLVVMLCNQNYIRNPYLVAKLVEV.FMTNPAVQPRTQKFFEMIE
Retrocopy IAEFLFFIVQYSPQVLYEPCTQDIVMFLVVMLCNQNYIRNPYLVAKLVEVVFMTNPAVQPRTQKFFEMIE

Parental  NHPLSTKLLVPSLMKFYTVDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQFVRY
          NHPLSTKLLVPSLMKFYT.DVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQFVRY
Retrocopy NHPLSTKLLVPSLMKFYT-DVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQFVRY

Parental  INMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWEQLPRDQQQARQSQLAQDERVSRSYLALATETVDM
          INMLINDTTFLLDESLESLKRIH.VQEEMKNKE.WEQLPRDQQQARQSQLAQDERVSRSYLALA.ET.DM
Retrocopy INMLINDTTFLLDESLESLKRIHKVQEEMKNKERWEQLPRDQQQARQSQLAQDERVSRSYLALAAETLDM

Parental  FHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCAR
          FHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCA.
Retrocopy FHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCAW

Parental  FAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAEKVEEIVAKNARAEIDYSDAPDEFRDPL
          FAKAIADDQRSYSKELFEEVISKMRKA.IKSTIAIEKFKLLAEKVEE.VAKNARAEIDYSDAPDEFRDPL
Retrocopy FAKAIADDQRSYSKELFEEVISKMRKARIKSTIAIEKFKLLAEKVEEMVAKNARAEIDYSDAPDEFRDPL

Parental  MDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIHAWMREKQNSDH
          MDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIHAWMREKQNSDH
Retrocopy MDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIHAWMREKQNSDH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_952 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000000159	1 retrocopy	retro_mluc_952 ,