RetrogeneDB ID: retro_mluc_967

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429786:5499147..5500570(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MANBA
• Ensembl ID: ENSMLUG00000005998
• Aliases: None
• Description: None

Sequence

>retro_mluc_967
CTCTGTGATGAAATACAAATAATGTTATGGTAGGATTTTATGTTTGCCTGTGCCCTTTATCCAAATAATCGGGACTTCAT
AAATTCAGTGAGAACAGAAGTTGCTTACCAGATCAGAAGACTGAAATCTCATCCCTCCATCATCATATGGAGTGGAAATA
ATGACAATAAAACAGCGCTGATGATGAATTAGTATAGTATAGACTTCACATACCTGCCTACCTACATGAAAGATTATATG
AAACTGTATTTTGAAAACATCCAAGAGATCGTCTTGGCAGACAAGACTTGTCCTTTTATCACATCTAGTCTTACAAATGA
AGTTGAATTCATTGCAGAAGGCTGGCTCTCTGCCAATCCATATAACAAACATTTTGGTAACATAAATTTTTATGACTATA
CCAGTGATTGCTAGGATTGGAACATTTTCCCAAAAGCTCTATTTGCATCTGAATATGGGTTATCAGTCCTGGCCTTTCTT
CAGTACATTAGAAAAGATTTCATCTAAAGAGGACTGGTCTTACAACAACAGATTTTCAAGTCATCAACAACATCATGAAA
ACAGTAACCATGAAATGCTTCTTCAGGCTGAACTTCATTTCAAATTCCTGAAAAGCACAGATCCATTACTCGCATTCAAA
GATACCATCTACCTTACTTAAGTGCTGCAGGCCCAGTGTGTCAAAATAGAAACTGAATTCTACCACTGCAGTCGCAGTGA
GGTAGTGAACGGAAAAGGGCACACCATGGGGGCACTGTATTGGCAGCTGATTGACATCTGGCAGGCTCCTTCCTGGGCCT
CTCTAGAGTACGCAGGAAAAGTGGAAAATGCTTATTACTTTGCTTGGCATTTCTTCACTCCATTGTTGTCTGTGGGTTTT
GAGGATAAAGGAGTGTTTTTCATCTATGGAGTGTCAGACCTTCACTCAAACTGTAATGTTCTGCTCTTTGTGAGAGTCCA
CAGGCAGAGTTCCCTGGAGCCTTTGTGCTCTCACAGGACCTAGCATTTTGTGATGAGAGCAGGGAAGGCCGTCCTCCTCT
TTCAGGAGCCAGTGTCTAAACTGCTGCAGAGATGTGGGCATTGTACACGGCAAAGCTGTATGGTTTCCTTTTACCTGTCA
ACCAATAGCAAACCCTTGAGTCAACCAATTATTACTTCCTGTCCTCACCAAAAGAGGCTGTGGGGCTCCAGAAGGCACAC
ATCACTGCCATCATCTCTCAGCAAAAGAACACATTTGTGTTTGATTTGGAAACCTCGGCTGTCGAGCTCTTCGTTTGGTT
GGATGTAAGAGTGTCCCAGGGAGATTCAGTAACAATGGTTTCCTCATGACGGAAAAGACATGGACTATATTATTTTACCC
CTGGAGGCCCACAGCAAGAGTGAATTGGAGCAATCTTTTCATGTGACTTCTTTGACTGATATT

Alignment

ORF - retro_mluc_967 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.54 %
• Parental protein coverage: 54.09 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  LCDELGIMVWQDFMFACALYPTDADFINSVRAEVAYQIRRLKSHPSIIIWGGNNENEAALMMNWYSIDFT
          LCDE..IM.W.DFMFACALYP...DFINSVR.EVAYQIRRLKSHPSIIIW.GNN.N..ALMMN.YSIDFT
Retrocopy LCDEIQIMLW*DFMFACALYPNNRDFINSVRTEVAYQIRRLKSHPSIIIWSGNNDNKTALMMN*YSIDFT

Parental  YLPTYMKDYVKLYVENIRELVLEADETRPFITSSPTNGVKSIEEGWLSADPYDNHFGDVHFYDYTRDCWD
          YLPTYMKDY.KLY.ENI.E.VL.AD.T.PFITSS.TN.V..I.EGWLSA.PY..HFG...FYDYT.DC.D
Retrocopy YLPTYMKDYMKLYFENIQEIVL-ADKTCPFITSSLTNEVEFIAEGWLSANPYNKHFGNINFYDYTSDC*D

Parental  WNIFPKARFASEYG-YQSWPSFSTLEKVSSKVDWSYNSSFSSHRQHHENGNEQMLFQAGLHFKLPHSTDP
          WNIFPKA.FASEYG.YQSWP.FSTLEK.SSK.DWSYN..FSSH.QHHEN.N..ML.QA.LHFK...STDP
Retrocopy WNIFPKALFASEYG>YQSWPFFSTLEKISSKEDWSYNNRFSSHQQHHENSNHEMLLQAELHFKFLKSTDP

Parental  LREFKDTIYLTQVMQAQCVKTETEFYRRSRSEIVDGKGHTMGALYWQLNDIWQAPSWASLEYGGKWKMLH
          L..FKDTIYLT.V.QAQCVK.ETEFY..SRSE.V.GKGHTMGALYWQL.DIWQAPSWASLEY.GK.....
Retrocopy LLAFKDTIYLT*VLQAQCVKIETEFYHCSRSEVVNGKGHTMGALYWQLIDIWQAPSWASLEYAGKVENAY

Parental  YIAQHFFAPLWPVGFEDKGVFFVYGVSDLHSNRMVTLTVRVHRWSSLEPVCSHRTPDLVMRAGKAVLLYQ
          Y.A.HFF.PL..VGFEDKGVFF.YGVSDLHSN..V.L.VRVHR.SSLEP.CSHRT...VMRAGKAVLL.Q
Retrocopy YFAWHFFTPLLSVGFEDKGVFFIYGVSDLHSNCNVLLFVRVHRQSSLEPLCSHRT*HFVMRAGKAVLLFQ

Parental  EPVSAMLQRCGHCTRQSCVVSFYLSANSKPLS-STNYHFLSSPKNAEGLQKADITAIISQHKDTFVFDLE
          EPVS..LQRCGHCTRQSC.VSFYLS.NSKPLS.STNY.FLSSPK.A.GLQKA.ITAIISQ.K.TFVFDLE
Retrocopy EPVSKLLQRCGHCTRQSCMVSFYLSTNSKPLS<STNYYFLSSPKEAVGLQKAHITAIISQQKNTFVFDLE

Parental  TKAVAPFVWLDV-GSVPGRFSDNGFLMTEKTRTIYFYPWRPT-SKSELEQSLHVTSLADI
          T.AV..FVWLDV..SVPGRFS.NGFLMTEKT.TI.FYPWRPT.SKSELEQS.HVTSL.DI
Retrocopy TSAVELFVWLDV<KSVPGRFSNNGFLMTEKTWTILFYPWRPT<SKSELEQSFHVTSLTDI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_967 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000005998	1 retrocopy	retro_mluc_967 ,