RetrogeneDB ID: retro_mluc_971

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429786:10021255..10021744(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025409
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000002256
• Aliases: None
• Description: None

Sequence

>retro_mluc_971
ATAATGCCTGGGCAGATCCATGACCCTTCCATGAATGTGGGCTCTCTGCCAGGGCTTGGCTCCCTGACCGCACTCCCCAG
CTCAGCCCTGACTGCAGAGGAGCTGAAATGTGCTGACATCCACAACATTGGGGCCATGATCACCCCTTTGCACTTCCTGG
AGGTGAAACTGGGCAAGAGGCCTCAACCTGTGAAAAGTGAGCTAGATGAGGAAGAGGAGTGGAGGAAAAGGCACCAGGAA
AAGAACAAAGTGGAGGCAGCCCCATGCAGGAACAAGAAGAAGGAGCAGATGGAGTTTCTGCAGCGGGAATCTGAGTGGCT
GGAGCTCATGAATGCTGAGCTGAAAAACGCAGATGGAGGACCTGAAGCAGGAGCAGCAGCAGCTCATCCTGATGCTCAGC
CGGCATTGCTCCACATGCATGTCAGGACCAACAGCGTTAAGATCCCCAACTCAGAAGGCAACCCACTGCTGGAGCAGCTG
GAGAAGAAG

Alignment

ORF - retro_mluc_971 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.82 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MMPGQIPDPSVTAGSLPGLGPLTGLPSSALTAEELKYADIRNIGAMIAPLHFLEVKLGKRPQPVKSELDE
          .MPGQI.DPS...GSLPGLG.LT.LPSSALTAEELK.ADI.NIGAMI.PLHFLEVKLGKRPQPVKSELDE
Retrocopy IMPGQIHDPSMNVGSLPGLGSLTALPSSALTAEELKCADIHNIGAMITPLHFLEVKLGKRPQPVKSELDE

Parental  EEERRKRRREKNKVAAARCRNKKKERTEFLQRESERLELMNAEL-KTQIEELKQERQQLILMLNRHRPTC
          EEE.RKR..EKNKV.AA.CRNKKKE..EFLQRESE.LELMNAEL.KTQ.E.LKQE.QQLILML.RH..TC
Retrocopy EEEWRKRHQEKNKVEAAPCRNKKKEQMEFLQRESEWLELMNAEL>KTQMEDLKQEQQQLILMLSRHCSTC

Parental  I-VRTDSVKTPDSEGNPLLEQLEKK
          ..VRT.SVK.P.SEGNPLLEQLEKK
Retrocopy M<VRTNSVKIPNSEGNPLLEQLEKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_971 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000002256	13 retrocopies	retro_mluc_1, retro_mluc_1530, retro_mluc_1553, retro_mluc_1840, retro_mluc_185, retro_mluc_2066, retro_mluc_2101, retro_mluc_2481, retro_mluc_343, retro_mluc_598, retro_mluc_927, retro_mluc_971 , retro_mluc_988,
Nomascus leucogenys	ENSNLEG00000016475	1 retrocopy	retro_nleu_2748,