RetrogeneDB ID: retro_mluc_978

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429786:5255657..5256446(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000005859
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: MAPKAPK2
• Ensembl ID: ENSMLUG00000001421
• Aliases: None
• Description: None

Sequence

>retro_mluc_978
ATGCTGCAGGACTGCGCCAGGCCCAGTGTGAGGTGGAGCTGCACTGGTGGGCCTCCCAGTGCTCACACATTGTGCAGATT
GTGGTCGTCTATGAAAATCTGTACGCGGGGAGGAAGTGCCTGCTCATCGTCATGGAGTGCTTGGATGGTGGAGAACTCTT
CAGCCAAATCCAGGACCGAGGAGGCCAGGTGTTCACAGAAAGAGGAGCTTCAGAAATCATGAAGAGCATTGGTGAGGCCA
TTCAGTATTTGCACTCAATCTACATTGCTCATACAGATGTCAAGCCGGAGAATCTCTTATAACTACCTCCAAAGGCCCAA
CGCCATCCTGAAACTCACCAATTTTGGCTTTGCCAAGGAAACCACCAGCCACAACTCGTTGACCACTCCTTGTTATATGC
CATACTATGTAGCTCCGGAAGTGCTGGGCCCAGAGAAGTATGACAAGTCCTGTGATATGTGGTACTTGAATGTCATCATG
TACATCCTGCTGTGTGGATACCCGCCCTTCTATTCCAACCATGGCCTGGCCATCTCTCCAGTCATGAAGACTCACATCCA
AATGGGCCAATATGAATTTCCCAACCCAGAGTGGTCAGAAGTATTAGAGGAAGTGAAGATGCACATCCGGAACCTGCTGA
AAACAGAGTCCACTCAGAGAATGACCATCACGAAGTTCATGAACCACCCCGGGATCATGCAATCAACAAAGGTCCCTCAA
ACCCCACTGCACACCAGCCAGGTCCTGAAGGAGGACAAGGAGTGGTGGGAGGATGTCAGGGAGGAGATG

Alignment

ORF - retro_mluc_978 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.42 %
• Parental protein coverage: 85.67 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MLQDCPK-ARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTERE
          MLQDC...A..EVELHW.ASQC.HIV.IV.VYENLYAGRKCLLIVMECLDGGELFS.IQDRG.Q.FTER.
Retrocopy MLQDCAR<AQCEVELHWWASQCSHIVQIVVVYENLYAGRKCLLIVMECLDGGELFSQIQDRGGQVFTERG

Parental  ASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKR-PNAILKLTDFGFAKETTSHNSLTTPCYTPYYVA
          ASEIMKSIGEAIQYLHSI.IAH.DVKPENLL......PNAILKLT.FGFAKETTSHNSLTTPCY.PYYVA
Retrocopy ASEIMKSIGEAIQYLHSIYIAHTDVKPENLL*LPPK>PNAILKLTNFGFAKETTSHNSLTTPCYMPYYVA

Parental  PEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKML
          PEVLGPEKYDKSCDMW.L.VIMYILLCGYPPFYSNHGLAISP.MKT.I.MGQYEFPNPEWSEV.EEVKM.
Retrocopy PEVLGPEKYDKSCDMWYLNVIMYILLCGYPPFYSNHGLAISPVMKTHIQMGQYEFPNPEWSEVLEEVKMH

Parental  IRNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTPLHTSRVLKEDKERWEDVKEEM
          IRNLLKTE.TQRMTIT.FMNHP.IMQSTKVPQTPLHTS.VLKEDKE.WEDV.EEM
Retrocopy IRNLLKTESTQRMTITKFMNHPGIMQSTKVPQTPLHTSQVLKEDKEWWEDVREEM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_978 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Erinaceus europaeus	ENSEEUG00000000525	1 retrocopy	retro_eeur_62,
Myotis lucifugus	ENSMLUG00000001421	1 retrocopy	retro_mluc_978 ,