RetrogeneDB ID: | retro_mmul_1010 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 13:112305971..112306769(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDK8 | ||
Ensembl ID: | ENSMMUG00000014841 | ||
Aliases: | None | ||
Description: | cyclin-dependent kinase 8 [Source:RefSeq peptide;Acc:NP_001248269] |
Percent Identity: | 74.82 % |
Parental protein coverage: | 59.4 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | LADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIF |
LADLDPV.VTFWYRAPELLL..RHYTKAIDIWA.GC.F.ELL.S.P.FH.RQEDI.TSNP.HHD.LDRI. | |
Retrocopy | LADLDPVIVTFWYRAPELLL*VRHYTKAIDIWAMGCMFEELLMSKPVFHGRQEDIITSNPCHHDWLDRIL |
Parental | NVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYT-NCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRIT |
NVMGFPA.KDWED.KKMPEHSTLMK.FRRN.YT.NCSLIKYMEKHKVKPDSKAFHLL.K.LTMDPIK.IT | |
Retrocopy | NVMGFPANKDWEDVKKMPEHSTLMKYFRRNKYT>NCSLIKYMEKHKVKPDSKAFHLL*KFLTMDPIK*IT |
Parental | SEQAMQDPYFLEDPLPTSDVFAGCQIPYPKREFLTEEEPDDKGDK-NQQQQQGNNHTNGTGHPG-NQDSS |
SEQ....P.FLEDPLPTSD.FAG.QIPYPK.EFL.EEEPDDKGDK.N..QQQGNNH.NGTGHPG.NQD.S | |
Retrocopy | SEQI---PHFLEDPLPTSDIFAGYQIPYPKSEFLMEEEPDDKGDKRNHHQQQGNNHMNGTGHPG<NQDNS |
Parental | HTQGPPLKKVRVVPPTTTSGGLIMTSDYQRSNPHAAYPNPGPSTSQPQSSMGYSATSQQPPQYSHQTH |
HTQ....KKVR.V.PTTTSGGL.M.SDYQRSN.H.AY....P...Q...S.......Q.P....H.TH | |
Retrocopy | HTQ----KKVRLVSPTTTSGGLFMASDYQRSNTHTAYI---PTLDQAHPSRRAAWDTQLPLSRLHSTH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 16 .47 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 10 .07 RPM |
SRP007412_cerebellum | 0 .00 RPM | 40 .23 RPM |
SRP007412_heart | 0 .00 RPM | 11 .72 RPM |
SRP007412_kidney | 0 .12 RPM | 13 .15 RPM |
SRP007412_liver | 0 .00 RPM | 8 .27 RPM |
SRP007412_testis | 0 .00 RPM | 36 .98 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2147 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001443 | 1 retrocopy | |
Homo sapiens | ENSG00000132964 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009176 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014841 | 1 retrocopy |
retro_mmul_1010 ,
|
Mus musculus | ENSMUSG00000029635 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014010 | 1 retrocopy |