RetrogeneDB ID: retro_mmul_1091

Retrocopy location

• Organism: Rhesus macaque (Macaca mulatta)
• Coordinates: 14:7992291..7992633(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FLJ44606
• Ensembl ID: ENSMMUG00000009523
• Aliases: None
• Description: glutaredoxin-like protein YDR286C homolog [Source:RefSeq peptide;Acc:NP_001244726]

Sequence

>retro_mmul_1091
ATGCTCTGGTTTCAAGGAAATAGCATGCAACTTGCCAAATCCTCCCTTGGAGTCTTCTTGGTAAACTGCTCTGCCTCTGA
GACAACTCTGCCTGTGCTGACCTTATTCACAAAGGACCCACACCCCGTTTGTGGTGAAGCCAAGGAAGTACTCAAGCCTT
ATAAAAACAGGTTTATTTTACAGGAAGTGAATGTCACACTTCCAGAAAACTCTGCCTGGTATGAAAGATATAAATTTGAC
ATTCCTGTCTTTCACTTGAATGGCCAGTTTCTGATGATGCATCGATAAAACACCTCAAAACTTGAAAAACAGCTCCTGAA
ACTTGAGCAGCAAAGTACCGGA

Alignment

ORF - retro_mmul_1091 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.72 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MLWLQGNSMPLARSAFGLFLRNCSASKTTLPVLTLFTKDPCPLCDEAKEVLKPYKNRFILQEVNITLPEN
          MLW.QGNSM.LA.S..G.FL.NCSAS.TTLPVLTLFTKDP.P.C.EAKEVLKPYKNRFILQEVN.TLPEN
Retrocopy MLWFQGNSMQLAKSSLGVFLVNCSASETTLPVLTLFTKDPHPVCGEAKEVLKPYKNRFILQEVNVTLPEN

Parental  SVWYERYKFDIPVFHLNGQFLMMHRVNTSKLEKQLLKLEQQSTG
          S.WYERYKFDIPVFHLNGQFLMMHR.NTSKLEKQLLKLEQQSTG
Retrocopy SAWYERYKFDIPVFHLNGQFLMMHR*NTSKLEKQLLKLEQQSTG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain	0.00 RPM	5.15 RPM
SRP007412_brain_prefrontal_cortex	0.00 RPM	5.47 RPM
SRP007412_cerebellum	0.13 RPM	4.13 RPM
SRP007412_heart	0.00 RPM	3.47 RPM
SRP007412_kidney	0.00 RPM	8.45 RPM
SRP007412_liver	0.00 RPM	5.78 RPM
SRP007412_testis	0.26 RPM	17.23 RPM

ChIP-Seq

Macaca mulatta was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmul_1091 retrocopy.

TSS

Macaca mulatta was not studied using FANTOM5 data.

Lab

retro_mmul_1091 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_mmul_1091 has 3 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Homo sapiens	retro_hsap_788
Gorilla gorilla	retro_ggor_653
Pongo abelii	retro_pabe_746

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000164241	1 retrocopy	retro_hsap_788,
Gorilla gorilla	ENSGGOG00000006111	1 retrocopy	retro_ggor_653,
Macaca mulatta	ENSMMUG00000009523	1 retrocopy	retro_mmul_1091 ,
Pongo abelii	ENSPPYG00000015732	1 retrocopy	retro_pabe_746,