>retro_mmul_1195
ACCTTCACGCTGAAGACAGTGCTCCCGATTGCCATCCAGCTGATCGCACGCATGGAGTATGTGCACACCAAGAGCCTCAT
TTACCAGGACGTGAAGTCCGAGAACTTCGTGGTGTGGCGCCCGGGGACCAAGCGGCAGCTCGCCATCCACATTATCAACT
TCGGGCCGGCCAAGGGGTACATTGGCCTTGAGACCGAGAAGCACATCCCGTACCGTGAGCACAAGAGCTTGACAGGCAGG
GCGCGCTACATGAACATCAACATGCAGCTGGGCAAGGAGCAGAGCCACTGCAGTGACCTGGAGGTGCTGGGCCACATGTT
CATGTACTTCCTGTGCTGCAGCCTCCCCTGGCAGGGGCTCAAGGCCGACACGATCATGAGCAGTACAGAATATCGGGAAC
ACCAAGCGCACCACGCCCATCGAAGTGCTCTGCTAGAACTTTCCAGAGGAGATGGCCACATACCTGCACTACGTGCGGCG
CCTGGACTTGGAGAAACCCGACTGTGACTACCTGTGGACCTCTCCACCGACCTCTTTGACCGAAGCGGCTTCGTGTTCGA
CTTTGAGTACCACTGGCCCAGGAAGCCCTTGGCGACCCCCATCGGCACCGTCCACACCAACCAACCCTCCCAGCCTCAGC
TTTGGGACAAAGATCAGCCACACAGCAAAAACCAGGTGCTGACCTCCACCAATGGGGAGCTGAATGTGGACGACCCCATG
GCCGGCCAGTCCCGCGCC
ORF - retro_mmul_1195 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
78.09 % |
Parental protein coverage: |
60.19 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | TFTLKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKEYIDPETKKHIP |
| TFTLKTVL.IAIQLI.RMEYVHTKSLIY.DVK.ENF.V.RPGTKRQ.AIHII.FG.AK.YI..ET.KHIP |
Retrocopy | TFTLKTVLPIAIQLIARMEYVHTKSLIYQDVKSENFVVWRPGTKRQLAIHIINFGPAKGYIGLETEKHIP |
|
Parental | YREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTL-KERY-QKIGDTKRA |
| YREHKSLTG.ARYM.IN..LGKEQS...DLE.LGHMFMYFL..SLPWQGLKADT...E.Y.Q.IG.TKR. |
Retrocopy | YREHKSLTGRARYMNINMQLGKEQSHCSDLEVLGHMFMYFLCCSLPWQGLKADTI<HEQY<QNIGNTKRT |
|
Parental | TPIEVLCENFPEEMATYLRYVRRLDFFEKPDYDYL-RKLFTDLFDRSGFVFDYEYDWAGKPLPTPIGTVH |
| TPIEVLC.NFPEEMATYL.YVRRLD..EKPD.DYL...L.TDLFDRSGFVFD.EY.W..KPL.TPIGTVH |
Retrocopy | TPIEVLC*NFPEEMATYLHYVRRLD-LEKPDCDYL<VDLSTDLFDRSGFVFDFEYHWPRKPLATPIGTVH |
|
Parental | TDLPSQPQLRDKGQPHSKNQALNSTNGELNADDPTAGHSNA |
| T..PSQPQL.DK.QPHSKNQ.L.STNGELN.DDP.AG.S.A |
Retrocopy | TNQPSQPQLWDKDQPHSKNQVLTSTNGELNVDDPMAGQSRA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .11 RPM |
12 .21 RPM |
SRP007412_brain_prefrontal_cortex |
0 .08 RPM |
50 .61 RPM |
SRP007412_cerebellum |
0 .00 RPM |
14 .85 RPM |
SRP007412_heart |
0 .12 RPM |
10 .13 RPM |
SRP007412_kidney |
0 .00 RPM |
15 .96 RPM |
SRP007412_liver |
0 .04 RPM |
17 .38 RPM |
SRP007412_testis |
0 .04 RPM |
238 .37 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1195 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1195 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_1195 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
5 retrocopies.