RetrogeneDB ID: | retro_mmul_1328 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 18:24898549..24899578(+) | ||
Located in intron of: | ENSMMUG00000032550 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PGD | ||
Ensembl ID: | ENSMMUG00000023029 | ||
Aliases: | None | ||
Description: | 6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:F6VFM9] |
Percent Identity: | 89.86 % |
Parental protein coverage: | 71.13 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SRADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRI |
..ADI.LI.LAVM.QNLILNMNDH.FVVCAFN.TVSKVDDFLA.EAKGTKVVGAQSLKEMVSKLKKP..I | |
Retrocopy | AQADIMLI*LAVMDQNLILNMNDHSFVVCAFNTTVSKVDDFLASEAKGTKVVGAQSLKEMVSKLKKPWQI |
Parental | ILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSL |
ILLVKA.QA.DDFI.KLVPLLDTGDIIIDGG.SEYRDTTRRC.DLKAKGILFVGSGVSGGE.GARYGPSL | |
Retrocopy | ILLVKARQAGDDFIKKLVPLLDTGDIIIDGGDSEYRDTTRRCQDLKAKGILFVGSGVSGGEKGARYGPSL |
Parental | MPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWAKVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVL |
MPGGN.EAWPHIKTI.QGIAAKVGTGEPCCDW..VGDE.AGHFVKMVHNGIEYGD...ICEAYHLMKDVL | |
Retrocopy | MPGGNEEAWPHIKTICQGIAAKVGTGEPCCDW--VGDEAAGHFVKMVHNGIEYGDVLMICEAYHLMKDVL |
Parental | GMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVT |
GMA.D.MAQAFEDWNKTELDSFLIEITANILKFQ..DGK.LLPKIRDSAGQKG.GKWT.ISALEYGVPVT | |
Retrocopy | GMAWDTMAQAFEDWNKTELDSFLIEITANILKFQNADGKCLLPKIRDSAGQKGMGKWTTISALEYGVPVT |
Parental | LIGEAVFARCLSSLKDERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQ |
LIGEAVFA.CLSSLK.ERIQASKKLKGPQKFQFDGDKKSFLEDI.KALY.SKIISYAQGFMLLRQ | |
Retrocopy | LIGEAVFAQCLSSLKNERIQASKKLKGPQKFQFDGDKKSFLEDIWKALYTSKIISYAQGFMLLRQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 1 .34 RPM | 27 .34 RPM |
SRP007412_brain_prefrontal_cortex | 0 .48 RPM | 32 .37 RPM |
SRP007412_cerebellum | 1 .16 RPM | 26 .93 RPM |
SRP007412_heart | 1 .18 RPM | 28 .80 RPM |
SRP007412_kidney | 2 .70 RPM | 71 .36 RPM |
SRP007412_liver | 1 .50 RPM | 63 .26 RPM |
SRP007412_testis | 1 .43 RPM | 37 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1877 |
Gorilla gorilla | retro_ggor_1374 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005090 | 2 retrocopies | |
Homo sapiens | ENSG00000142657 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004754 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000023029 | 1 retrocopy |
retro_mmul_1328 ,
|
Otolemur garnettii | ENSOGAG00000011164 | 1 retrocopy |