RetrogeneDB ID: | retro_mmul_1374 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 19:41287872..41288508(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ZNF24 | ||
| Ensembl ID: | ENSMMUG00000009322 | ||
| Aliases: | None | ||
| Description: | zinc finger protein 24 [Source:RefSeq peptide;Acc:NP_001252944] |
Retrocopy-Parental alignment summary:
>retro_mmul_1374
GAGGAGTGTGATGGGATTCTGACAGTGAAGACAGAAGAGCAGACCGGTGATCTGGACTCTAGCCTCCATTGGAGCAGCAG
CTACAGCCCAGAGACCTTCCGCTGGCAGACCTTCTGCAGTCAGTTTGACTACCAGGATTCACCGGGGCCCCTGGAGGCTC
TGAGCCAGCTCTGGGAACTTTGTCATCTCTGACTGAGGCCAGAGGTGCACACCAAGGAGCAGATCCTGGAGCTGCTGGTG
CTGGAGCAGTTCCTGGCCATCCTCCCAAAAAACCTGCAGCCCTGGATGCAGAGGCATCATCCAGAAAATGGAGAGGAAGC
TGTGGCTATGCTGGAGGATGTGCGGAGAGAGCTTGATGGACCAGGGCAGGTCTTTTTTGGACAAAGAAAGGACATGGTTG
CAGAGAAGCTAGCACCTTCAGAAATCACTGAGCAATTACCAGCTAGCCAGCGCATGCCCGTGAAAAAGCAGCTCCAGGGA
GCATCATGGGAGCTGCAGTCCTTAAGACCACATGATGAAGACATCAAAACTATAAATGTGAAATCCGCTTCAAGGCAAAA
GACTTCTTCAGGCATAGAACTGCATCACGATGTTTTCAACATTCTCCGTATGAATGCCTCCCAGAGTTCCACATAT
ORF - retro_mmul_1374 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 52.56 % |
| Parental protein coverage: | 57.61 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | DEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEIFR-QRF-RQFGYQDSPGPREAVSQLRELCRLWLRPET |
| .E...IL.VK.EE...G...SS..W.....PE.FR.Q.F..QF.YQDSPGP.EA.SQL.ELC.L.LRPE. | |
| Retrocopy | EECDGILTVKTEEQT-GDLDSSLHWSSSYSPETFRWQTFCSQFDYQDSPGPLEALSQLWELCHL*LRPEV |
| Parental | HTKEQILELVVLEQFVAILPKELQTWVRDHHPENGEEAVTVLEDLESELDDPGQPVSLRRRKREVLVEDM |
| HTKEQILEL.VLEQF.AILPK.LQ.W...HHPENGEEAV..LED...ELD.PGQ.V....RK.....E.. | |
| Retrocopy | HTKEQILELLVLEQFLAILPKNLQPWMQRHHPENGEEAVAMLEDVRRELDGPGQ-VFFGQRK-DMVAEKL |
| Parental | VSQEEAQGLPSSELDAVENQLKWASWELHSLRHCDDDGRTENGALAPKQELPSAVE-SHEVPGTLNMSVP |
| ...E....LP.S....V..QL..ASWEL.SLR..D.D..T.N...A..Q...S..E..H.V...L.M... | |
| Retrocopy | APSEITEQLPASQRMPVKKQLQGASWELQSLRPHDEDIKTINVKSASRQKTSSGIELHHDVFNILRMNAS |
| Parental | QIFKY |
| Q...Y | |
| Retrocopy | QSSTY |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 16 .14 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 11 .34 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 18 .60 RPM |
| SRP007412_heart | 0 .00 RPM | 7 .95 RPM |
| SRP007412_kidney | 0 .00 RPM | 13 .15 RPM |
| SRP007412_liver | 0 .00 RPM | 3 .60 RPM |
| SRP007412_testis | 2 .68 RPM | 14 .14 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1374 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1374 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_1374 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macaca mulatta | ENSMMUG00000009322 | 1 retrocopy |
retro_mmul_1374 ,
|
| Mus musculus | ENSMUSG00000051469 | 1 retrocopy | |
| Oryctolagus cuniculus | ENSOCUG00000029679 | 1 retrocopy |