RetrogeneDB ID: | retro_mmul_1594 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 3:7407491..7407932(+) | ||
| Located in intron of: | ENSMMUG00000008504 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MMU.19283 | ||
| Ensembl ID: | ENSMMUG00000022602 | ||
| Aliases: | None | ||
| Description: | methyltransferase-like protein 21A [Source:RefSeq peptide;Acc:NP_001181046] |
Retrocopy-Parental alignment summary:
>retro_mmul_1594
CAGTCCCAGAGACAACTGGGAATTGCCACGGTGGTTTGGGATGTGGCCATGGTTTTCTCCACATATCTGGAGATGGGAGC
TGTGGTGCTCTTGGGCTGCCTCGCAGTGAAACTGGGTGCTGGCATAGGGCTGATAGGCAGAGTGGCTGCCTTGCTGGGTG
CTCATGTGACTATCACAGATCGAAAAGTAGCATTAGAATTTTGTAAATCGAATGGTCAAGGCAGTTTACCTCCTTGTATC
CAACCCAGAGCTTTTGTTAAGGAGTTGACTTGGGGAAAGAATTTGGGGAGTTTTACTCGTAGAGATTTTGACCTGATACT
TGGAGCCGACATCATATATTTAGAAGAAACATTCACAAATCTTCTTCAAACACTGGACCATCTCTGTTGCAATCATTCCA
TGATTCTTTTAGCTTGCTGAATTCACTATGAACAGAATAAT
ORF - retro_mmul_1594 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 74.83 % |
| Parental protein coverage: | 67.43 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | QDWRHLGVAAVVWDAAIVLSTYLEMGAVELRGRSAVELGAGTGLVGIVAALLGAHVTITDRKVALEFLKS |
| Q..R.LG.A.VVWD.A.V.STYLEMGAV.L.G..AV.LGAG.GL.G.VAALLGAHVTITDRKVALEF.KS | |
| Retrocopy | QSQRQLGIATVVWDVAMVFSTYLEMGAVVLLGCLAVKLGAGIGLIGRVAALLGAHVTITDRKVALEFCKS |
| Parental | NVQANLPPHIQPKTVVKELTWGQNLGSFSPGEFDLILGADIIYLEETFTDLLQTLEHLCSNHSVILLACR |
| N.Q..LPP.IQP...VKELTWG.NLGSF....FDLILGADIIYLEETFT.LLQTL.HLC.NHS.ILLAC. | |
| Retrocopy | NGQGSLPPCIQPRAFVKELTWGKNLGSFTRRDFDLILGADIIYLEETFTNLLQTLDHLCCNHSMILLAC* |
| Parental | IRYERDN |
| I.YE..N | |
| Retrocopy | IHYEQNN |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .11 RPM | 12 .55 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 14 .20 RPM |
| SRP007412_cerebellum | 0 .19 RPM | 5 .36 RPM |
| SRP007412_heart | 0 .12 RPM | 2 .94 RPM |
| SRP007412_kidney | 0 .00 RPM | 4 .23 RPM |
| SRP007412_liver | 0 .00 RPM | 3 .01 RPM |
| SRP007412_testis | 0 .00 RPM | 2 .79 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1594 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1594 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_1594 has 3 orthologous retrocopies within eutheria group .| Species | RetrogeneDB ID |
|---|---|
| Homo sapiens | retro_hsap_2532 |
| Pan troglodytes | retro_ptro_1475 |
| Pongo abelii | retro_pabe_1863 |
Parental genes homology:
Parental genes homology involve 5 parental genes, and 6 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Homo sapiens | ENSG00000144401 | 1 retrocopy | |
| Macaca mulatta | ENSMMUG00000022602 | 1 retrocopy |
retro_mmul_1594 ,
|
| Nomascus leucogenys | ENSNLEG00000007129 | 2 retrocopies | |
| Pongo abelii | ENSPPYG00000013116 | 1 retrocopy | |
| Pan troglodytes | ENSPTRG00000012852 | 1 retrocopy |