>retro_mmul_1627
CGGAAAGCCAAGCGTGCAGAGGACCACGCTGAGGGCCGCCTCATCTACCACGTCGGGGACTGGCTACAAGAGCGATATGA
AATCGTTAGCACTTTAGGAAGGGGGACCTTCGGCCGAGTTGTACAATGTGTTGACCATTGCAGGGGTGGGACTCGAGTTG
CCCTGAAGATCGTTAAAAATGTGGAGAAGTGTAAGGAAGCAGCTTGACTTGAGATCAACGTGCTGGAGAAGATCAACGAG
AAAGACCCTGACAACAAGAACCTCTGTGTCCAGATGTTTGACTGGTTTGACTACCATGGCCACGTGTGCATCTCCTTTGA
GCTTCTGGGCCTTAGCACCTTCGATTTCCTCAAAGACAACAACTACCTGCCCTACCCCATCTACCAAGTGTGCCACATGG
CCTTCCAGCTGTGCCAGGCTGTCAAGTTCCTCCATGATAACAAGCCGATGCATACAGACCTCAAACCTGAAAATATTCTG
TTTGTGAATTCAGACTATGAGCTCACCTACAACCTAGAGAAGAAGCGAGATGAGCGCAGTGTGAAGAGCACAGCTGTGCA
GGTGGGAGACTGG
ORF - retro_mmul_1627 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
90.05 % |
Parental protein coverage: |
52.33 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | RRAKSVEDDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAARL |
| R.AK..ED.AEG.LIYHVGDWLQERYEIVSTLG.GTFGRVVQCVDH.RGG.RVALKI.KNVEK.KEAA.L |
Retrocopy | RKAKRAEDHAEGRLIYHVGDWLQERYEIVSTLGRGTFGRVVQCVDHCRGGTRVALKIVKNVEKCKEAA*L |
|
Parental | EINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPIHQVRHMAFQLCQA |
| EINVLEKINEKDPDNKNLCVQMFDWFDYHGH.CISFELLGLSTFDFLKDNNYLPYPI.QV.HMAFQLCQA |
Retrocopy | EINVLEKINEKDPDNKNLCVQMFDWFDYHGHVCISFELLGLSTFDFLKDNNYLPYPIYQVCHMAFQLCQA |
|
Parental | VKFLHDNKLTHTDLKPENILFVNSDYELTYNLEKKRDERSVKSTAVRVVDF |
| VKFLHDNK..HTDLKPENILFVNSDYELTYNLEKKRDERSVKSTAV.V.D. |
Retrocopy | VKFLHDNKPMHTDLKPENILFVNSDYELTYNLEKKRDERSVKSTAVQVGDW |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
21 .29 RPM |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
13 .72 RPM |
SRP007412_cerebellum |
0 .00 RPM |
36 .94 RPM |
SRP007412_heart |
0 .00 RPM |
13 .90 RPM |
SRP007412_kidney |
0 .12 RPM |
31 .45 RPM |
SRP007412_liver |
0 .00 RPM |
21 .69 RPM |
SRP007412_testis |
5 .58 RPM |
10 .59 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1627 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1627 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_1627 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.