RetrogeneDB ID: | retro_mmul_1691 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:81428986..81429285(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4648 | ||
Ensembl ID: | ENSMMUG00000001913 | ||
Aliases: | None | ||
Description: | 28S ribosomal protein S23, mitochondrial [Source:RefSeq peptide;Acc:NP_001253417] |
Percent Identity: | 74.51 % |
Parental protein coverage: | 53.16 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | IRAKFYSVYGSGQR-AFDLFNPNYKSTCQRFVEKYTELQKLGETDEEKLFVETGKALLAEGVILRRVGEA |
I.AKFYS.Y.SGQ...FDLFNP..KSTCQ.FV.KY.ELQKL.ETDEEKLFVE.GKALLAE.VILR.V.EA | |
Retrocopy | IGAKFYSAYKSGQK<VFDLFNPSFKSTCQCFV-KYIELQKLKETDEEKLFVEIGKALLAESVILR*VREA |
Parental | RTQHEGSHDSWKSEHLSVRPQTAVEENETQKE |
RTQ.EGSH.SW.SEH...RPQTA..EN..QKE | |
Retrocopy | RTQQEGSHVSWTSEHMIFRPQTALKENQPQKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 17 .26 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 18 .88 RPM |
SRP007412_cerebellum | 0 .00 RPM | 14 .79 RPM |
SRP007412_heart | 0 .06 RPM | 30 .21 RPM |
SRP007412_kidney | 0 .00 RPM | 17 .96 RPM |
SRP007412_liver | 0 .00 RPM | 8 .15 RPM |
SRP007412_testis | 0 .00 RPM | 13 .65 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3727 |
Pan troglodytes | retro_ptro_2523 |
Pongo abelii | retro_pabe_3131 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014008 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008761 | 1 retrocopy | |
Felis catus | ENSFCAG00000005711 | 1 retrocopy | |
Homo sapiens | ENSG00000181610 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001913 | 1 retrocopy |
retro_mmul_1691 ,
|
Mustela putorius furo | ENSMPUG00000015372 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008072 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025941 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009440 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009862 | 1 retrocopy |