>retro_mmul_2276
ATGGACCCATCTGTGACGCTGTGGCAGTTTCTGCTACATCTGCCGAGAGAGCAAGGCAATGGCCACATCTCCTGGACTTC
ACGGGATGGTGGTGAATTCAAGCTGGTGGATGCAGAGGAGGCGGCCCGGCTGTAGGGGCTACGCAAGAACAAGAGCACCA
TGAATTACGACAAGCTCGCCGGGCCCTGCCGTACTACCATCACAGGAACATCGTCCGCAAGGAGAGCGGCCAGAAGCTCG
TCTACAAGTCAGTGTCCTACCTGAGGTCGCAGGGTGCTCCACCGAGGACTGCCCGCCCCAACCAGCCGTGTCTGTTACCT
CCGCCATGGCAAATGTGGCCCCTGCTGCCGTACCTGCCGCCCCAGGGAACACTGTCTCAGGAAAGCCGGGCACACCCAAG
GCTGCAGGAAGGGCAGGCCCTGGCGGTTTGGCGCGCAGCAGCCGGAACAAGTACCTGCGCTCGGGCCTCTCTTCCACCCG
CACCATCCAGTCTCTGCAGCCACAGCCGCCCCCTCGGCCTCCGCCTGCTGTGCCGCTCCCCAGCGCCGCTCCCGCAGGAG
CAGCAGCGCCCCCGGGGAGCAGGAGCCCCAGTCCCAGCCGCCTGCAGGCCCGCCTGGAGGCTGAGGAGGCCCGCTTGCCT
CTGCAGGTCATCCTGACCCGGCCCGAGGCCCCAAACCTGAAATCGGAAGAGCTGAAAGTGGAGCTGGGTTTG
ORF - retro_mmul_2276 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
82.23 % |
Parental protein coverage: |
56.07 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLS-RALRYYYD |
| MDPSVTLWQFLL.L.REQGNGHI.SWTSRDGGEFKLVDAEE.ARL.GLRKNK..MNYDKL..RAL.YY.. |
Retrocopy | MDPSVTLWQFLLHLPREQGNGHI-SWTSRDGGEFKLVDAEEAARL*GLRKNKSTMNYDKLA<RALPYYHH |
|
Parental | KNIIRKVSGQKFVYKFVSY-PEVAGCSTEDCPPQPEVSVTSAMPNVAPAAVHATPGDTASGKPGTPKGAG |
| .NI.RK.SGQK.VYK.VSY.PEVAGCSTEDCPPQP.VSVTSAM.NVAPAAV.A.PG.T.SGKPGTPK.AG |
Retrocopy | RNIVRKESGQKLVYKSVSY<PEVAGCSTEDCPPQPAVSVTSAMANVAPAAVPAAPGNTVSGKPGTPKAAG |
|
Parental | MAGPGGLARSSRNEYMRSGLYSTFTIQSLQPQPPPHPRPAVVLPNAAPAGAAAPPSGSRSTSPSPLEACL |
| .AGPGGLARSSRN.Y.RSGL.ST.TIQSLQPQPPP.P.PAV.LP.AAPAGAAAPP.GSRS.SPS.L.A.L |
Retrocopy | RAGPGGLARSSRNKYLRSGLSSTRTIQSLQPQPPPRPPPAVPLPSAAPAGAAAPP-GSRSPSPSRLQARL |
|
Parental | EAEEAGLPLQVILTPPEAPNLKSEELNVEPGL |
| EAEEA.LPLQVILT.PEAPNLKSEEL.VE.GL |
Retrocopy | EAEEARLPLQVILTRPEAPNLKSEELKVELGL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
15 .46 RPM |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
55 .85 RPM |
SRP007412_cerebellum |
0 .00 RPM |
15 .56 RPM |
SRP007412_heart |
0 .06 RPM |
5 .12 RPM |
SRP007412_kidney |
0 .12 RPM |
4 .69 RPM |
SRP007412_liver |
0 .00 RPM |
10 .17 RPM |
SRP007412_testis |
0 .26 RPM |
17 .49 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_2276 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_2276 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_2276 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
5 retrocopies.