>retro_mmul_2377
TCAGGGCTCACCTGACTGCCCCTGAAGCAGCCAGAGCCCACCAGAGCCCCTCAGGGGACAGCGATCCCCTGAGGTATCCC
GGGGCCACCACCGGGCCACGGAGCAGCACTCCAGCCCCACTCCAGGGTCATTTTTTGCCCTCTCCCATCTGAGCAGTGTT
ACCAGGCCCCAGGGGGACCTGAGAATTAGGGCCGGCCTGGGTGGGGTCCCATGGAGTACTCCAGCGCACTCAGGGGCTCC
CTGCAGACGGGGGGCCTTCGCCCCGGAAGCCTGGACGCTGAGATAGACTTGCTGAGCAGCACGCTGGCCGAGCTGAAGGG
GGGTCGGGGTCATGCGCCCCTGCGACCAGACCAACAGGCAGAGCCCCGGCCACCTCCTGCCTCCCGCCCGGGCTCTCTGA
AGCCGAACCCAGCCTCGCGCTCCCAGCGTCTCCCTATGGGGCCCCACTGCAGCCTCTTATGCTGCCGCCAGCCCCCCCGG
CCGGCCTTCCCCGTGCAAGCAAAGGTGGCACAGTCAGTGAGGGGCTGCGGCCCACCCAGGCGGGGAACCTCTCAGGCCTC
TGGGCCCCTCCCGGGCCCCCACTTTCTGTCCCAGGCCAAGGTGAAGTCTGGGGGCCTGGCTATAGGAGCCAGAGAGAGCC
AGGGCCGGGGGCCAAAGAGGAAGCTGCGGGGGTCTCTGGCCCCGCAGGAGGAGGAAGAGGACGCGAGCACGGCCCCAGGT
GCCCCTGAGCCACCTCGGGAGGATGAGCTTGTCAGGCTGTCGAAGAAGCAGGTGCACGACATGAACCACCCGCCCAGCTG
GGAGTACTTTGGCCAGTGTGGTGGCTGCGGAGATGTGGTCGGGGATGGGGCTGGGGTTGTGGCCCTCGATTGCGTCTTTC
ATGTGGGCTGTTTTGTGTGTTCTACATGCCGGGCCCAGCTTCGGGGACAGCATTTCTACGCCATGGAGAGAGGGCGTGTT
GCCAGGGCTGCTACGTGGCCACCCGGGAGAAATGTGCCACGTGCTCCCAGCCCACCCTGGACCGGATCCTGCGGGCTATG
GGGAAGGACTACCACCCCAGCTGCTTCACC
ORF - retro_mmul_2377 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
83.65 % |
Parental protein coverage: |
76.26 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
10 |
Retrocopy - Parental Gene Alignment:
Parental | SGPTWLPPKQPEPARAPQGRAIPRGTPGPPPAHGAALQPHPRVNFCPLPSEQCYQAPGGPE-DRGPAWVG |
| SG.T.LP.KQPEP.RAPQG.AIP.G.PGPPP.HGAALQPH.RV.FCPLPSEQCYQAPGGPE...GPAWVG |
Retrocopy | SGLT*LPLKQPEPTRAPQGTAIP*GIPGPPPGHGAALQPHSRVIFCPLPSEQCYQAPGGPE<ELGPAWVG |
|
Parental | SHGVLQRTQGL-PADRG-GLRPGSLDAEIDLLSSTLAELNGGRGHVPRRPERQAYEPLPPPAYRTGSLKP |
| SHGVLQRTQGL.P..RG.GLRPGSLDAEIDLLSSTLAEL.GGRGH.P.RP..QA.EP.PPPA.R.GSLKP |
Retrocopy | SHGVLQRTQGL<PCRRG<GLRPGSLDAEIDLLSSTLAELKGGRGHAPLRPDQQA-EPRPPPASRPGSLKP |
|
Parental | NPAS-PLPASPYG-GPTPASYATASTPAG-PAFPVQVKVAQPVRGCGPPRRGASQASGPLPGPHF-PLPG |
| NPAS..LPASPYG.GPT.ASYA.AS.P.G.PAFPVQ.KVAQ.VRGCGPPRRG.SQASGPLPGPHF...PG |
Retrocopy | NPAS<ALPASPYG<GPTAASYAAAS-PPG<PAFPVQAKVAQSVRGCGPPRRGTSQASGPLPGPHF<SVPG |
|
Parental | RGEVWGPGYRSQREPGPGAKEEAAGVSGPAGGGRGGEHG-PQVHLSQ-PPEDELDRLTKKLVHDMNHPPS |
| .GEVWGPGYRSQREPGPGAKEEAAGVSGPAGGGRG.EHG.PQV.LS..P.EDEL.RL.KK.VHDMNHPPS |
Retrocopy | QGEVWGPGYRSQREPGPGAKEEAAGVSGPAGGGRGREHG<PQVPLSH<PREDELVRLSKKQVHDMNHPPS |
|
Parental | GEYFGQCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVER-RAYCEGCYVATLEKCAT |
| .EYFGQCGGCG.DVVGDGAGVVALD.VFHVGCFVCSTCRAQLRGQHFYA.ER.RA.C.GCYVAT.EKCAT |
Retrocopy | WEYFGQCGGCG-DVVGDGAGVVALDCVFHVGCFVCSTCRAQLRGQHFYAMER<RACCQGCYVATREKCAT |
|
Parental | CSQPILDRILRAMGKAYHPGCFT |
| CSQP.LDRILRAMGK.YHP.CFT |
Retrocopy | CSQPTLDRILRAMGKDYHPSCFT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
2 .69 RPM |
SRP007412_brain_prefrontal_cortex |
0 .16 RPM |
7 .70 RPM |
SRP007412_cerebellum |
0 .00 RPM |
4 .84 RPM |
SRP007412_heart |
0 .00 RPM |
11 .07 RPM |
SRP007412_kidney |
0 .00 RPM |
10 .45 RPM |
SRP007412_liver |
0 .00 RPM |
2 .38 RPM |
SRP007412_testis |
0 .04 RPM |
7 .16 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_2377 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_2377 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_2377 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.