>retro_mmul_2511
AGTCTATCTCCTGAAAAACATATTGCAAACATAAATACAAACTACAATGTAGACAAAGTTATTAAATATGGCTATGAAAG
TGCTACACATCTGTGTGATTTGTATTATATTAATTCTTCCAAATTCAAACATGCAGAAGTAAATATAAAGCCATGACGAC
AACCAGTGTAAGTGGGTGATGTACCATCGTATCTCTTTCACCTGGTGTTTGAATTTTTCAAGAATGCAATGGGAACAACT
ATGGGCCATCATGTCAATGAAGTGTTTATCCCCCTATTCAAGTTTCTGTCACACTGGGTAATAAAGATTTGACTGTAAAA
TGAGTCACTGAGGAAGTAGTGTTCTTTTGAGGAAAACTGACAGACTCTTCATCTACATGTGTTCAAGTGCACCACATCCT
GGTGCTGAGATTTTCTGAGCAGTGTTTCTGGCTAGGTTTGGTTACAGATTGCCCATGTCATGTCTTTATACACAATACTA
CCAAGGAGATCTAATGCTATATTCCCTGGAGGGTTATGAAACAGACACAGCTATCTACATTAAAGCACTGCCAACAGAAT
CAATAGAAAGACTCCAAGTGTATAATAAAACTGCCTGGAAATATTACAACACT
ORF - retro_mmul_2511 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
54.11 % |
Parental protein coverage: |
52.7 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | SPSHRKHIGSINPNCNVVEVIKDGYENARRLCDLYYINSPELELGELNAKSPGQPIQVVYVPSHLYHMVF |
| S.S..KHI..IN.N.NV..VIK.GYE.A..LCDLYYINS......E.N.K...QP..V..VPS.L.H.VF |
Retrocopy | SLSPEKHIANINTNYNVDKVIKYGYESATHLCDLYYINSSKFKHAEVNIKP*RQPV*VGDVPSYLFHLVF |
|
Parental | ELFKNAMRATMEHHANR-GVYPPIQVHVTLGNEDLTV-KMSDRGGGVPLRKIDRLFNYMYSTAPRPRVET |
| E.FKNAM..TM.HH.N...VYPPIQV.VTLGN.DLTV.KMS..G..V.LRK.DRLF.YM.S.AP.P..E. |
Retrocopy | EFFKNAMGTTMGHHVNE<SVYPPIQVSVTLGNKDLTV<KMSH*GSSVLLRKTDRLFIYMCSSAPHPGAEI |
|
Parental | SRAVPLVLCFCQLPSTCSSCQISGIRINKILIECYLICFFFFFQALSTDSIERLPVYNKAAWKHYNT |
| ..AV.L......LP..C...Q...........E.Y.........AL.T.SIERL.VYNK.AWK.YNT |
Retrocopy | F*AVFLARFGYRLPMSCLYTQYYQGDLMLYSLEGYETDTAIYIKALPTESIERLQVYNKTAWKYYNT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
3 .47 RPM |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
2 .30 RPM |
SRP007412_cerebellum |
0 .00 RPM |
4 .26 RPM |
SRP007412_heart |
0 .00 RPM |
8 .01 RPM |
SRP007412_kidney |
0 .00 RPM |
5 .40 RPM |
SRP007412_liver |
0 .00 RPM |
1 .39 RPM |
SRP007412_testis |
0 .00 RPM |
24 .99 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_2511 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_2511 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_2511 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
6 retrocopies.