RetrogeneDB ID: retro_mmul_285

Retrocopy location

• Organism: Rhesus macaque (Macaca mulatta)
• Coordinates: 7:166174461..166175097(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMMUG00000011751
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: MMU.4866
• Ensembl ID: ENSMMUG00000012283
• Aliases: None
• Description: neuroendocrine protein 7B2 precursor [Source:RefSeq peptide;Acc:NP_001247601]

Sequence

>retro_mmul_285
ATGGTCTCCAGGATGGTCTCTACCATGCTCTCTGGCTTATTGTTTTGGCTGGCATCGGGATGGACTCCAGCATTTGCCTA
CAGCCCCCGGACCCCTGACAGGGTCTCAGAAACAGATATCCAGAGGCTGCTTCACGGCGTTATGGAGCAATTGGGCATTG
CCAGGCCCCGAGTGGAATATCCAGCTCACCAGGCCATGAATCTTGTGGGCCCCCAGAGCATCGAAGGTGGAGCTCATGAG
GGACTTCAGCATTTGGGTCCTTTTGGCAACATCCCCAACATCGTGGCAGAGTTGACTGGAGACAACATTCCCAAGGACTT
CAGTGAGGATCAGGGGTACCCAGACCCTCCAAATCCCTGTCCTGTTGGAAAAACAGATGATGGATGTCTAGAAAACACCC
CCGACACCGCAGAGTTCAGTCGAGAGTTCCAGCTGCATCAGCATCTGTTTGATCCGGAACATGACTATCCAGGCTTGGGC
AAGTGGAACAAGAAACTCCTTTATGAGAAGATGAAGGGAGGAGAGAGACGAAAGCGGAGGAGTGTCAATCCATATCTACA
AGGACAGAGACTGGATAATGTTGTGGCAAAGAAGTCTGTCCCCCATTTTTCAGATGAGGATAAGGACCCAGAGTAA

Alignment

ORF - retro_mmul_285 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.53 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MVSRMVSTMLSGLLFWLASGWTPAFAYSPRTPDRVSETDIQRLLHGVMEQLGIARPRVEYPAHQAMNLVG
          MVSRMVSTMLSGLLFWLASGWTPAFAYSPRTPDRVSETDIQRLLHGVMEQLGIARPRVEYPAHQAMNLVG
Retrocopy MVSRMVSTMLSGLLFWLASGWTPAFAYSPRTPDRVSETDIQRLLHGVMEQLGIARPRVEYPAHQAMNLVG

Parental  PQSIEGGAHEGLQHLGPFGNIPNIVAELTGDNIPKDFSEDQGYPDPPNPCPVGKTVDDGCLENTPDTAEF
          PQSIEGGAHEGLQHLGPFGNIPNIVAELTGDNIPKDFSEDQGYPDPPNPCPVGKT.DDGCLENTPDTAEF
Retrocopy PQSIEGGAHEGLQHLGPFGNIPNIVAELTGDNIPKDFSEDQGYPDPPNPCPVGKT-DDGCLENTPDTAEF

Parental  SREFQLHQHLFDPEHDYPGLGKWNKKLLYEKMKGGERRKRRSVNPYLQGQRLDNVVAKKSVPHFSDEDKD
          SREFQLHQHLFDPEHDYPGLGKWNKKLLYEKMKGGERRKRRSVNPYLQGQRLDNVVAKKSVPHFSDEDKD
Retrocopy SREFQLHQHLFDPEHDYPGLGKWNKKLLYEKMKGGERRKRRSVNPYLQGQRLDNVVAKKSVPHFSDEDKD

Parental  PE
          PE
Retrocopy PE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain	2.80 RPM	53.45 RPM
SRP007412_brain_prefrontal_cortex	3.57 RPM	94.64 RPM
SRP007412_cerebellum	4.13 RPM	55.08 RPM
SRP007412_heart	0.06 RPM	2.24 RPM
SRP007412_kidney	0.12 RPM	0.82 RPM
SRP007412_liver	0.00 RPM	0.04 RPM
SRP007412_testis	0.57 RPM	16.89 RPM

ChIP-Seq

Macaca mulatta was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmul_285 retrocopy.

TSS

Macaca mulatta was not studied using FANTOM5 data.

Lab

retro_mmul_285 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_mmul_285 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macaca mulatta	ENSMMUG00000012283	1 retrocopy	retro_mmul_285 ,