>retro_mmul_467
GAAATGAATGTTATACCGAAAGGTTCTCCAGTTGATTTGGTAACTGCTGCGGACCAAAAAGTTGAAGAAATGCTTATCTC
TTCCATAAAAGAAAAGTACCCATCTCAGTTTCATTGGTGAGGAATCTGTGGCAGCGGGGAGAAAAGTGCCTTAACTAACA
ACCCCACGTGGATCATTGACCCTATTGATGGAACAACTAACTTTGTACATAGATTTCCTTTTGTAGCTGTTTCAATCGGC
TTTGCTGTAAATAAAAAGATATAATTTGGAGTTGTATACAGTTATGCGGGAGATAAGATGTACACTTCCAGGAAAGAAAA
AGGTGCCTTTTGTAATGGTCAAAAACTACAGGTTTCACAACAAGAAGATATTACCAAACCACTCTTGGTGACTGAATTGG
GCTCTTCCAGAACACCAGAGACTGTAAGAATTGTTCTTTCTAACATGGAAAAGTTTTTTTGCATTCCTGTTCATGGGATC
CGGAGTATTGGAACGGCAGCTGTTTGCCTTGTGGCAATTGGAGGAGCAGATGCATATTATGCAATGGGAATTCACTGCTG
GGCTCTTGCAGGAGTTAGCATTATTATTACTGAAGCTGATGGCATGCTAATGGATGTTACAGGTGGATCATTTGATTTGA
TGTCACTAAGAGTAATTGCTGCAAAT
ORF - retro_mmul_467 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
84.65 % |
Parental protein coverage: |
81.23 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | EMNVMLKSSPVDLVTATDQKVEKMLISSI-KEKYPSH-SFIGEESVAAG-EKSILTNNPTWIIDPIDGTT |
| EMNV..K.SPVDLVTA.DQKVE.MLISSI.K.K.P...SFIGEESVAAG.EKS.LTNNPTWIIDPIDGTT |
Retrocopy | EMNVIPKGSPVDLVTAADQKVEEMLISSI<KRKVPIS<SFIGEESVAAG<EKSALTNNPTWIIDPIDGTT |
|
Parental | NFVHRFPFVAVSIGFAVNKKIEFGVVYSCVEDKMYTARKGKGAFCNGQKLQVSQQEDITKSLLVTELGSS |
| NFVHRFPFVAVSIGFAVNKKI.FGVVYS...DKMYT.RK.KGAFCNGQKLQVSQQEDITK.LLVTELGSS |
Retrocopy | NFVHRFPFVAVSIGFAVNKKI*FGVVYSYAGDKMYTSRKEKGAFCNGQKLQVSQQEDITKPLLVTELGSS |
|
Parental | RTPETVRIVLSNMEKLFCIPVHGIRSVGTAAVNMCLVATGGADAYYEMGIHCWDVAGAGIIVTEAGGILM |
| RTPETVRIVLSNMEK.FCIPVHGIRS.GTAAV..CLVA.GGADAYY.MGIHCW..AG..II.TEA.G.LM |
Retrocopy | RTPETVRIVLSNMEKFFCIPVHGIRSIGTAAV--CLVAIGGADAYYAMGIHCWALAGVSIIITEADGMLM |
|
Parental | DVTGGPFDLMSRRVIAAN |
| DVTGG.FDLMS.RVIAAN |
Retrocopy | DVTGGSFDLMSLRVIAAN |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .11 RPM |
21 .18 RPM |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
9 .68 RPM |
SRP007412_cerebellum |
0 .26 RPM |
15 .89 RPM |
SRP007412_heart |
0 .00 RPM |
9 .42 RPM |
SRP007412_kidney |
0 .47 RPM |
5 .87 RPM |
SRP007412_liver |
0 .04 RPM |
4 .95 RPM |
SRP007412_testis |
0 .15 RPM |
22 .01 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_467 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_467 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_467 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.