RetrogeneDB ID: | retro_mmul_505 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:80882886..80883373(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NIT2 | ||
Ensembl ID: | ENSMMUG00000020024 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.85 % |
Parental protein coverage: | 59.78 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | ATFRLALIQLQISS-IKSDNVTRACSFIREAATQGAKIVSLPECFNSPYGTKYFPEYAEKIPGESTQKLS |
ATF.LALIQLQ.SS.IKSDN.TRACS...E.AT.GAKIVSL..CFNSPYGTKYFPEYA.KIPG.STQKLS | |
Retrocopy | ATFDLALIQLQVSS<IKSDNNTRACSLVQETATKGAKIVSLLGCFNSPYGTKYFPEYAAKIPGKSTQKLS |
Parental | EVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHLFDIDVPGKITFQESETLSPGDSFST |
EVAKE.S..L..GSI.EEDAGK.YNTCA.F.P.GTLL.K.RK.HL.D..VPGK.TFQES..LSPG.SFS. | |
Retrocopy | EVAKEYS--LTRGSILEEDAGKSYNTCALFAPHGTLLVKHRKVHLLDTGVPGKMTFQESRMLSPGNSFSP |
Parental | FDTPYCRVGLGICYDMR-FAELAQIYA |
FDTP.CR.G.GICYD...FAELAQ..A | |
Retrocopy | FDTPNCRMGWGICYDIG<FAELAQAQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 12 .89 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 14 .20 RPM |
SRP007412_cerebellum | 0 .00 RPM | 5 .62 RPM |
SRP007412_heart | 0 .00 RPM | 17 .55 RPM |
SRP007412_kidney | 0 .00 RPM | 83 .92 RPM |
SRP007412_liver | 0 .04 RPM | 46 .27 RPM |
SRP007412_testis | 0 .04 RPM | 4 .26 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_411 |
Pan troglodytes | retro_ptro_315 |
Gorilla gorilla | retro_ggor_406 |
Callithrix jacchus | retro_cjac_3014 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003980 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000590 | 1 retrocopy | |
Homo sapiens | ENSG00000114021 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003724 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020024 | 2 retrocopies |
retro_mmul_1758, retro_mmul_505 ,
|
Mustela putorius furo | ENSMPUG00000011450 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002631 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015161 | 1 retrocopy |