RetrogeneDB ID: | retro_mmul_621 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 10:14654021..14654951(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | N-PAC | ||
Ensembl ID: | ENSMMUG00000009567 | ||
Aliases: | GLYR1, N-PAC | ||
Description: | None |
Percent Identity: | 81.7 % |
Parental protein coverage: | 66.6 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | EKETGSTSIQAADSTAVNGSITPTDKKIGF-LGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGA |
..ETGSTSI.AADS.AVNGSIT......G..LGL..MGSGIVS.LLKMGHTVTVWN.TA.KCDLFI.EGA | |
Retrocopy | KEETGSTSIRAADSRAVNGSITTKR*DLGA<LGL--MGSGIVSSLLKMGHTVTVWNCTAKKCDLFI*EGA |
Parental | RLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIR-PGKCYVDMSTVDADTVTELAQVIVSR-- |
.LGRTPAEV.STC..TFA.V.DPKAAKDLVLGPSG.LQGI..PG.CYVDMST.DAD.VTELAQVIVSR.. | |
Retrocopy | YLGRTPAEVLSTCGTTFAHVLDPKAAKDLVLGPSGMLQGIH<PGECYVDMSTLDADIVTELAQVIVSRSG |
Parental | -GGRFLEAP-VSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGS |
.GG.F...P..SGNQQLSN.GMLVILAAGDRGLYEDCSSC.Q.MGKTSFFLGEVG.AAKMMLI.NMVQGS | |
Retrocopy | SGGAFQKPP<ISGNQQLSNQGMLVILAAGDRGLYEDCSSCIQTMGKTSFFLGEVGSAAKMMLIMNMVQGS |
Parental | FMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDA |
FMA.I.E.LTLAQVT.QSQQTLLDILNQGQLASI.LDQKCQNILQGNFKPDFYLKY.QKDL.LAI.LG.A | |
Retrocopy | FMAMITEVLTLAQVTYQSQQTLLDILNQGQLASILLDQKCQNILQGNFKPDFYLKYMQKDLCLAIVLGNA |
Parental | VNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAYIH |
VNHPTPMAAAAN.VYKRAKALDQSDN.MS.V..AYIH | |
Retrocopy | VNHPTPMAAAANKVYKRAKALDQSDN-MSTVSQAYIH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 45 .38 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 68 .30 RPM |
SRP007412_cerebellum | 0 .13 RPM | 36 .16 RPM |
SRP007412_heart | 0 .06 RPM | 22 .61 RPM |
SRP007412_kidney | 0 .23 RPM | 36 .38 RPM |
SRP007412_liver | 0 .08 RPM | 21 .77 RPM |
SRP007412_testis | 0 .04 RPM | 27 .33 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000019912 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000011783 | 1 retrocopy | |
Homo sapiens | ENSG00000140632 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016258 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009567 | 1 retrocopy |
retro_mmul_621 ,
|
Nomascus leucogenys | ENSNLEG00000009950 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010486 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007072 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007730 | 1 retrocopy |