RetrogeneDB ID: | retro_mmul_847 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 11:19491503..19491859(-) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000032099 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | MEF2BNB | ||
| Ensembl ID: | ENSMMUG00000018374 | ||
| Aliases: | None | ||
| Description: | MEF2B neighbor [Source:HGNC Symbol;Acc:37247] |
Retrocopy-Parental alignment summary:
>retro_mmul_847
ATGGAGGAACCGGAGATGCAGCTCAAGGGGAAGAAAGTCACGGACACATTCACTGAGAGCATCTGCGTCCTGGCGAATGA
GCCGTCGGTGGCCCTGTACCGGCTGCAGGAGCACGTGCGCCCCTCCCTCCCGGAGCTGGCTCGGCACAAGGCAGCCATGC
AGCGTTGGGAGGTGCAGAGCCAGGGAGCCATCTACACCGCGGAGTACGACCGCAGCGCCGTGAAGAAGCTGGTGGACAGC
AGCGTCTACTTCCGCAACGTGGAAGTCTGCTCAAACAGGCCATCAGCATTCGAGACCATATGAATGCCAGTGCCCAGGGC
CACCGGTAGCCGCTGGGACCGCCCGCCCCCGCTGCC
ATGGAGGAACCGGAGATGCAGCTCAAGGGGAAGAAAGTCACGGACACATTCACTGAGAGCATCTGCGTCCTGGCGAATGA
GCCGTCGGTGGCCCTGTACCGGCTGCAGGAGCACGTGCGCCCCTCCCTCCCGGAGCTGGCTCGGCACAAGGCAGCCATGC
AGCGTTGGGAGGTGCAGAGCCAGGGAGCCATCTACACCGCGGAGTACGACCGCAGCGCCGTGAAGAAGCTGGTGGACAGC
AGCGTCTACTTCCGCAACGTGGAAGTCTGCTCAAACAGGCCATCAGCATTCGAGACCATATGAATGCCAGTGCCCAGGGC
CACCGGTAGCCGCTGGGACCGCCCGCCCCCGCTGCC
ORF - retro_mmul_847 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 82.5 % |
| Parental protein coverage: | 99.16 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | MEEPEMQLKGKKVTDKFTESVYVLANEPSVALYRLQEHVRRSLPELAQHKADMQRWEEQSQGAIYTVEYA |
| MEEPEMQLKGKKVTD.FTES..VLANEPSVALYRLQEHVR.SLPELA.HKA.MQRWE.QSQGAIYT.EY. | |
| Retrocopy | MEEPEMQLKGKKVTDTFTESICVLANEPSVALYRLQEHVRPSLPELARHKAAMQRWEVQSQGAIYTAEYD |
| Parental | CSAVKNLVDSSVYFRSVE-GLLKQAISIRDHMNASAQGHS-PEEPPPPSS |
| .SAVK.LVDSSVYFR.VE..LLKQAISIRDHMNASAQGH..P..PP.P.. | |
| Retrocopy | RSAVKKLVDSSVYFRNVE<SLLKQAISIRDHMNASAQGHR*PLGPPAPAA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 4 .59 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 10 .07 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 3 .55 RPM |
| SRP007412_heart | 0 .00 RPM | 3 .71 RPM |
| SRP007412_kidney | 0 .00 RPM | 3 .40 RPM |
| SRP007412_liver | 0 .00 RPM | 7 .76 RPM |
| SRP007412_testis | 0 .75 RPM | 7 .35 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_847 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_847 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_847 has 2 orthologous retrocopies within eutheria group .| Species | RetrogeneDB ID |
|---|---|
| Homo sapiens | retro_hsap_1092 |
| Pan troglodytes | retro_ptro_744 |
Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Homo sapiens | ENSG00000254901 | 1 retrocopy | |
| Macaca mulatta | ENSMMUG00000018374 | 1 retrocopy |
retro_mmul_847 ,
|
| Pan troglodytes | ENSPTRG00000039907 | 1 retrocopy |