RetrogeneDB ID: | retro_mmul_938 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 12:12433413..12433878(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000031468 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3739 | ||
Ensembl ID: | ENSMMUG00000007918 | ||
Aliases: | ZNHIT3, TRIP-3, TRIP3 | ||
Description: | zinc finger HIT domain-containing protein 3 [Source:RefSeq peptide;Acc:NP_001182347] |
Percent Identity: | 98.06 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASLRCSTVVCVICLEKPKYRCPACRVPYCSVACFRKHKEQCNPEARPVEKKIRSALPTKTIKPVENKDD |
MASLRCSTVVCVICLEKPKYRCPACRVPYCSVACFRKHKEQCNPEARPVEKKIRSALPTKTIKP.ENKDD | |
Retrocopy | MASLRCSTVVCVICLEKPKYRCPACRVPYCSVACFRKHKEQCNPEARPVEKKIRSALPTKTIKPLENKDD |
Parental | DDSIADFLNSDEEEDRVSLQNLKNLGKSATLRSLLLNPHLRQLMVNLDQGEDKAKLMRAYMQEPLFVEFA |
DDSIADFLNSDEEEDRVSLQNLKNL..SATLRSLLLNPHLRQLMVNLDQGEDKAKLMRAYMQEPLFVEFA | |
Retrocopy | DDSIADFLNSDEEEDRVSLQNLKNLRESATLRSLLLNPHLRQLMVNLDQGEDKAKLMRAYMQEPLFVEFA |
Parental | DCCLGIVEPSQNEDS |
DCCLGIVEPSQNEDS | |
Retrocopy | DCCLGIVEPSQNEDS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .45 RPM | 3 .92 RPM |
SRP007412_brain_prefrontal_cortex | 2 .06 RPM | 3 .49 RPM |
SRP007412_cerebellum | 0 .26 RPM | 2 .71 RPM |
SRP007412_heart | 0 .12 RPM | 2 .18 RPM |
SRP007412_kidney | 0 .00 RPM | 2 .46 RPM |
SRP007412_liver | 0 .12 RPM | 0 .67 RPM |
SRP007412_testis | 1 .73 RPM | 4 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012672 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011745 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018407 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000013155 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007918 | 1 retrocopy |
retro_mmul_938 ,
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