RetrogeneDB ID: retro_mmur_1033

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_166553:1..746(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ACTR6
• Ensembl ID: ENSMICG00000016393
• Aliases: None
• Description: ARP6 actin-related protein 6 homolog (yeast) [Source:HGNC Symbol;Acc:24025]

Sequence

>retro_mmur_1033
ATGACGACCTTAGTGCTGGATAATGGAGCCTACAACGCCAAAATCAGTTACAGCCACAAAAATGTCTCGGTCATTCCTAA
CTGTCAGTTCAGCTCAAAAACAGCACGTCTTAAAACTTTTATGGCTAACCAGATAGATGAAATTAAAGACCCTTCTGGAC
TCTTTTACATCCTTCCTTTTCAAAAGGGCTACTTGGTGAATTGGGATGTTCAAAGATAAGTTTGGGATTACCTTTTTGGA
AAAGAAATGTATCAGGTTGATTTTTTGGATACTAATATTATTATCACAGAACCATATTTTAACTTCACTTCAATTCAAGA
ATCAATGAATGAAATTCTATTTGAAGAATACCAGTTCCAAGCAGTATTAAGAGTAAATGCTGGGGCTCTCAGTGCATGTA
GGTATTTCCGAGATAATCCTTTCGAATTATGCTGTATCATTGTAGATAGTGGATATTCCTTTACACATATAGTTCCTTAT
TGCAGAAGTAAAAAGAAAAAAGAAGCAATTATTAGGATAAATGTTGGAGGAAAACTCTTAACCAATCATCTAAAGGAGAT
CATATCTTACAGGCAGCTACACGTTATGGATGAAACACATGTGATTAATCAAGTGAAAGAAGATGTATGCTATGTGTCTC
AGCATTTTTATAAAGATATGGATATTGCAAAATTGAAAGGAGAAGAAAATACAGTAATGATAGACTATTGTTCTGCCTGA
CTTCAGTACCATTAAGAAGGGCTTT

Alignment

ORF - retro_mmur_1033 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.39 %
• Parental protein coverage: 62.63 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MTTLVLDNGAYNAKIGYSHENVSVIPNCQFRSKTARLKTFTANQIDEIKDPSGLFYILPFQKGYLVNWDV
          MTTLVLDNGAYNAKI.YSH.NVSVIPNCQF.SKTARLKTF.ANQIDEIKDPSGLFYILPFQKGYLVNWDV
Retrocopy MTTLVLDNGAYNAKISYSHKNVSVIPNCQFSSKTARLKTFMANQIDEIKDPSGLFYILPFQKGYLVNWDV

Parental  QRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGALSAHRYFRDNP
          QR.VWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGALSA.RYFRDNP
Retrocopy QR*VWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGALSACRYFRDNP

Parental  SELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYRQLHVMDETHVINQVKEDVC
          .ELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYRQLHVMDETHVINQVKEDVC
Retrocopy FELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYRQLHVMDETHVINQVKEDVC

Parental  YVSQDFYKDMDIAKLKGEENTVMIDY-VLPDFSTIKKGF
          YVSQ.FYKDMDIAKLKGEENTVMIDY.VLPDFSTIKKGF
Retrocopy YVSQHFYKDMDIAKLKGEENTVMIDY>VLPDFSTIKKGF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1033 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1033 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000016393	1 retrocopy	retro_mmur_1033 ,