RetrogeneDB ID: retro_mmur_1034

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_16691:13309..13889(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NEK7
• Ensembl ID: ENSMICG00000007338
• Aliases: None
• Description: NIMA-related kinase 7 [Source:HGNC Symbol;Acc:13386]

Sequence

>retro_mmur_1034
GTGCAGATATTTGATTTAATGGATGGGAAAGCACGTGCTGATTGCATCAAAGAAATAGGTCTCTTACTTAAGCAACTCAA
CCATCCAAATGTAATTAAATGTTATGCATCATTCATGGAAGACAATGAACTAAACATAGTCTTGGAATGAGCAGATGCTG
GTGATCTATCCAGAATGATAAAGCATTTTAAGAAGCAGAAGAGGCTAATTCCTGAAAGAGCCGTTTGTTTGGCAGTACTT
TGTCCAGCTCTGCAGCACCTTGGAACCCATGCATTCTCCGAGAGTCACACACAGAGACATAAAACCAGCGAATGTGTTCA
TCACAGCCCCCGGGGTGGTGAAACTTGGGGATCTTCGACTTGGCCGGTTTTTCAGCTCCAAAACCACAGCGGCACATTCT
TTAGTGGGTACTCCTTATTGCACGTCTCCAGAGAGAATACATGAAAATGGACACAACTTCAAATCTGACATCTGGTCTCT
TGGCTGTCTACTGTATGAGACGGCCGCATTGCAGAGTCCCTTCTATGGGGACAAAATGAACTTGTACTCGCTGTACAAGA
AGATAGAGCAGAGTGACTAC

Alignment

ORF - retro_mmur_1034 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.02 %
• Parental protein coverage: 80.85 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VQIFDLMDAKARADCIKEIDLL-KQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHF-KKQKRL
          VQIFDLMD.KARADCIKEI.LL.KQLNHPNVIK.YASF.EDNELNIVLE.ADAGDLSRMIKHF.K.....
Retrocopy VQIFDLMDGKARADCIKEIGLLLKQLNHPNVIKCYASFMEDNELNIVLE*ADAGDLSRMIKHFKKQKRLI

Parental  -IPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPY
          ...E..VW.YFVQLCS.LE.MHS.RV.HRDIKPANVFITA.GVVKLGDL.LGRFFSSKTTAAHSLVGTPY
Retrocopy >LKEPFVWQYFVQLCSTLEPMHSPRVTHRDIKPANVFITAPGVVKLGDLRLGRFFSSKTTAAHSLVGTPY

Parental  YMSPERIHENGYNFKSDIWSLGCLLYE-MALQSPFYGDKMNLYSLCKKIEQCDY
          ..SPERIHENG.NFKSDIWSLGCLLYE..ALQSPFYGDKMNLYSL.KKIEQ.DY
Retrocopy CTSPERIHENGHNFKSDIWSLGCLLYETAALQSPFYGDKMNLYSLYKKIEQSDY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1034 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1034 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000007338	2 retrocopies	retro_mmur_1034 , retro_mmur_1147,
Oryctolagus cuniculus	ENSOCUG00000011419	2 retrocopies	retro_ocun_1221, retro_ocun_1726,
Tarsius syrichta	ENSTSYG00000004270	1 retrocopy	retro_tsyr_2093,