RetrogeneDB ID: retro_mmur_1035

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_1670:152006..153141(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: OSBPL9
• Ensembl ID: ENSMICG00000002731
• Aliases: None
• Description: oxysterol binding protein-like 9 [Source:HGNC Symbol;Acc:16386]

Sequence

>retro_mmur_1035
CACAGCAGCTCAGAAAAGAGTCTGAAGCTCCCAGATCCCACCGAATCACTTAATTCTTCTATGTCCAATGGAACAAGTGC
TGTTGACCTTTATGATTCACATGATGATAGAGATGACTGTGGGGAGGCAGGGTCACTGGAGGAGCACAAGAGCGTTATCA
TGCACCTTTTGTCATAGGATAGGCGTTGAATGAATCTTACCAAGGAAATTCTTCCAAAATTTATTCTTGAAAGAAGACCT
CTTTTAGAAATGTATGCAGACGTATTTTGCACATCCAGACCTGTTTGTGAGCATTAGTAACCAGAAAGATTCCAGGGATA
GAATGTTTCAGGTTGTAAAATGGCACCTCAGCCTTTCATGCAGGAAGGAAAGCATCAGTTGCCAAAAAGACATACAGTCC
CATTTTGTGCAAAGTCTTTCAGTGTCATTGAACATTACCAAATGATATTGAAAAGAACACAGAGTTCGTTTCAGCAGGAC
CAGTTCCCCGGGTTTCCAAAAACAGTATAACATTCATGGCTTAGCAGGTTTCTCATCATCCACCGATTATAGCCTCTTAT
GCTGAGTGTTATAACAAGAAGATACAATTCAGTGCTCATGTCTGGACCAAATCAAAATTCTCTGGAATGTCAACTGGGGA
GCACAACCTAGGGCATGGCTGTGTCTTGTATCTAGACTATGACTACATTCTTACCTTCCCCAATGGTTATAGAAGGTCCG
TCCTCACAGTGCTCTGGGAGGAATTAGAAGAATGCAATATTAATTGTTCCAAAATGGACTATACTGCAAATATTCTCTCA
CACACTAAACCTTTCTATGGGGATAAGAAGCACAGAATTATTGCTGAGATTTTTTTCTCCATGTGACAAGAGTCTTTTTG
CTCAATTGAAGAGGAATGGAATGGTGTAATGTATGCAAAATATGTGACAGGTGAAAACATAGTCTTTGTAAATACCAGGA
AATTGCCAATAATCAAGAAGAAAGTGAGGAAGTGGGAAGATCACAATGCATATGAATACTGCTGCCTTGGGAAGGATGTC
ACTCTCAATTTAAAAATCAGAGACATTGATGCAGCAACTGAAGCAAAGCACAGGCTTGAATAAAGACAAAAGAGGAAGAA
AGGAGGAGAAGGAAA

Alignment

ORF - retro_mmur_1035 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.51 %
• Parental protein coverage: 51.93 %
• Number of stop codons detected: 6
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  HQSSSSPKRLIDSSGSASVLTHSSSGNSLKRPDTTLFDSHDDRDDDGEAGSVEEHKSVIMHLLSQVRLGM
          H.SS.....L.D...S......SS..N.....D..L.DSHDDRDD.GEAGS.EEHKSVIMHLLS..R..M
Retrocopy HSSSEKSLKLPDPTESLN----SSMSNGTSAVD--LYDSHDDRDDCGEAGSLEEHKSVIMHLLS*DRR*M

Parental  DLTKVVLPTFILERRSLLEMYAD-FFAHPDLFVSISDQKDPRDRMVQVVKWYLS-AFHAGRKGSVAKKPY
          .LTK..LP.FILERR.LLEMYAD..FAHPDLFVSIS.QKD.RDRM.QVVKW.LS..F....K....K...
Retrocopy NLTKEILPKFILERRPLLEMYAD>YFAHPDLFVSISNQKDSRDRMFQVVKWHLS<PFMQEGKHQLPKRHT

Parental  NPILGEIF-QCHWTLPNDTEENTELVSEGPVPGVSKNSVTFVAEQVSHHPPISAFYAECFNKKIQFNAHI
          .P.....F.QCH.TLPND.E.NTE.VS.GPVP.VSKNS.TF.A.QVSHHPPI.A.YAEC.NKKIQF.AH.
Retrocopy VPFCAKSF<QCH*TLPNDIEKNTEFVSAGPVPRVSKNSITFMA*QVSHHPPIIASYAECYNKKIQFSAHV

Parental  WTKSKFLGMSIGVHNIGQGCVSCLDYDEHYILTFPNGYGRQVSILTVPWVELGGECNINCSKTGYSANIV
          WTKSKF.GMS.G.HN.G.GCV..LDYD..YILTFPNGY.R..S.LTV.W.EL..ECNINCSK..Y.ANI.
Retrocopy WTKSKFSGMSTGEHNLGHGCVLYLDYD--YILTFPNGYRR--SVLTVLWEEL-EECNINCSKMDYTANIL

Parental  FHTKPFYGGKKHRITAEIFSPNDKKSFCSIEGEWNGVMYAKYATGESTVFVDTKKLPIIKKKVRKLEDQN
          .HTKPFYG.KKHRI.AEIF......SFCSIE.EWNGVMYAKY.TGE..VFV.T.KLPIIKKKVRK.ED.N
Retrocopy SHTKPFYGDKKHRIIAEIFFSM*QESFCSIEEEWNGVMYAKYVTGENIVFVNTRKLPIIKKKVRKWEDHN

Parental  EYESRCLWKDVTFNLKIRDIDAATEAKHRLEERQ-RAEARERKE
          .YE..CL.KDVT.NLKIRDIDAATEAKHRLE.RQ...E.R.R..
Retrocopy AYEYCCLGKDVTLNLKIRDIDAATEAKHRLE*RQ<KEEERRRRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1035 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1035 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000021574	1 retrocopy	retro_cjac_1235,
Felis catus	ENSFCAG00000010298	1 retrocopy	retro_fcat_1134,
Gorilla gorilla	ENSGGOG00000004787	1 retrocopy	retro_ggor_737,
Microcebus murinus	ENSMICG00000002731	1 retrocopy	retro_mmur_1035 ,
Myotis lucifugus	ENSMLUG00000009199	1 retrocopy	retro_mluc_2149,
Nomascus leucogenys	ENSNLEG00000016138	2 retrocopies	retro_nleu_1820, retro_nleu_279,
Oryctolagus cuniculus	ENSOCUG00000004303	1 retrocopy	retro_ocun_281,
Pongo abelii	ENSPPYG00000001358	2 retrocopies	retro_pabe_689, retro_pabe_787,
Pan troglodytes	ENSPTRG00000000730	1 retrocopy	retro_ptro_632,
Ictidomys tridecemlineatus	ENSSTOG00000000692	1 retrocopy	retro_itri_1537,