RetrogeneDB ID: | retro_mmur_1072 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | scaffold_1994:82892..83164(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | REEP6 | ||
| Ensembl ID: | ENSMICG00000003588 | ||
| Aliases: | None | ||
| Description: | receptor accessory protein 6 [Source:HGNC Symbol;Acc:30078] |
Retrocopy-Parental alignment summary:
>retro_mmur_1072
TTGACACTGGTATTCAGTTATGGAGCCTCTTTCCTCTGCATTCTGATAGGATTTGGCTACCCAGCCTACATCTCAATTAA
AGCCATAGAGAGTTCTAGCAAAGAAGATGATGCCCTGTGGCTGACCTACTGGATAGTGCACAGTGTATTTGGCATAGCTG
AATTCTTCTCTGATCTCTTCCTGTCATGGTTCTCTTCTACTACAAGCTGAAGCATGGCTTCCTATGGTGGTGCATGGCCC
CAAGCCCTTCTCATGGGGCGGAACTGCTCTAT
ORF - retro_mmur_1072 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 64.13 % |
| Parental protein coverage: | 62.76 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | LYLLFGYGASLLCNVIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYALFGLVEFFSDLLLFWFP-FYYV |
| L.L.F.YGAS.LC..IGF.YPAY.SIKAIES.SKEDD..WLTYW.V...FG..EFFSDL.L.WF..FYY. | |
| Retrocopy | LTLVFSYGASFLCILIGFGYPAYISIKAIESSSKEDDALWLTYWIVHSVFGIAEFFSDLFLSWFS<FYYK |
| Parental | GKCAFLLFCMMPGPWNGALMLY |
| .K..FL..CM.P.P..GA..LY | |
| Retrocopy | LKHGFLWWCMAPSPSHGAELLY |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1072 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1072 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 4 parental genes, and 4 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000003588 | 1 retrocopy |
retro_mmur_1072 ,
|
| Monodelphis domestica | ENSMODG00000005050 | 1 retrocopy | |
| Sarcophilus harrisii | ENSSHAG00000012645 | 1 retrocopy | |
| Drosophila melanogaster | FBgn0033906 | 1 retrocopy |