RetrogeneDB ID: retro_mmur_1094

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_21707:4315..5329(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000002190
• Aliases: None
• Description: None

Sequence

>retro_mmur_1094
TTCTCCTGGGTGGGCAGCAGCGGCTTCCAGGTGGCCTGGGAATGGGTCTGGGTGGCGGCTATGCCCGGCCAGTGGTATGG
GGGGCATCACAGCCATCACAGTGAACCAGAACCTGCTAAGCCCCCTCAATCTGGAGGTGGCCCTCAACATGCAGGCTGTG
TGCAACCAGGAGAAGGAGGAGATCAAAGCCCTCAACAACAAGTTTGCCTCCTTCATCGACAAGGTGCGGTTCCTGGAGCA
GCAGAACAAGATGCTGGAGACCAAGTGGAGCCTCCTGCAGCAGCAGAAAGCAGCTTGGAGCACCATGAATGGCATGTTTG
ACAACTACATCAGCAACCTTCTGCTACAGCTGGACACACTGGGCCAGGAGAAGCTGAAGCTGGAGGGGGAGCTTGGCAAT
ATGCAGGGGCTGGTGGAGAACTTCAAGAATAAGTATGAGAATGAGATCAACAAGTGTACAGAGATGGAGAATGAATCTGT
CCTCATCAAGAAGGATGTGGATGAAGCTTACATGAACAAGGTAGAGCTGGAGTCTCGCCTGGAAGGGCTGACTGATGAGA
TCAACTTCCTCAGGCAGCTACATGAAGAGGAGATCTGTGAGTTGCAGTCCCAGATCTCGGACACATCTGTGGTTCTGTCC
ATGATAACATCTGCTCGCTGAACATGGATAGCATCATCGCTGAGGTCCTCGCCCAGTACGAGGAGATCGTCACCCGCAGC
TGGGCTGAGTCTGAGAGCATGTACCAGACCAAGTAGGAGGAGCTGGAGGTTCTGGCTGGGAAGCATAGGGATGACCTGCA
TCGCACGAAGACAGAGATCTCCAACTTGAACCGGAACATCAGCTGGCTGCAGGCTGAGATCGAAGGTCTTAAAGGCCAGA
GGGCTTCCCTGGAGGCTGCCATTGCGGATGCTGAGCAGTGCGAGAATCTGGACGTTACCGATGCCAAGGCCAACGTGGAC
GAGCTGAATGCCGCCCTGCAGTGAGCCAAGCAGGGCATGGCGCGGCAGCTGCGT

Alignment

ORF - retro_mmur_1094 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.73 %
• Parental protein coverage: 59.65 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  FGLGGGAGFGGGF-GGAGFPVCPP---GGIQEVTINQNLLTPLNLQIDPTIQRVRTEEREQIKTLNNKFA
          F...G..GF......G.G...CP....GGI...T.NQNLL.PLNL......Q.V...E.E.IK.LNNKFA
Retrocopy FSWVGSSGFQVAW>NGSGWRLCPASGMGGITAITVNQNLLSPLNLEVALNMQAVCNQEKEEIKALNNKFA

Parental  SFIDKVRFLEQQNKVLDTKWTLLQEQGTKTVRQNLEPLFEQYISTLRRQLDSILGDKGRLDSELRGMQDL
          SFIDKVRFLEQQNK.L.TKW.LLQ.Q..K.........F..YIS.L..QLD.....K..L..EL..MQ.L
Retrocopy SFIDKVRFLEQQNKMLETKWSLLQQQ--KAAWSTMNGMFDNYISNLLLQLDTLGQEKLKLEGELGNMQGL

Parental  VEDFKNKYEDEINKRTAAENEFVTLKKDVDAAYMNKVELQARVDSLTDEINFLRAFYDAELSQMQTHISD
          VE.FKNKYE.EINK.T..ENE.V..KKDVD.AYMNKVEL..R...LTDEINFLR.....E....Q..ISD
Retrocopy VENFKNKYENEINKCTEMENESVLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLHEEEICELQSQISD

Parental  TSVVLSM-DNNRNLDLDSIIAEVKAQYEEIAQRSRAEAESWYQTKYEELQVTAGRHGDDLRNTKQEIAEM
          TSVVLSM.DN...L..DSIIAEV.AQYEEI..RS.AE.ES.YQTK.EEL.V.AG.H.DDL..TK.EI...
Retrocopy TSVVLSM<DNICSLNMDSIIAEVLAQYEEIVTRSWAESESMYQTK*EELEVLAGKHRDDLHRTKTEISNL

Parental  NRMIQRLRSEIDHVKKQCANLQAAIADAEQRGEMALKDARSKLEGLEDALQRAKQDMARLLK
          NR.I..L..EI...K.Q.A.L.AAIADAEQ.......DA......L..ALQ.AKQ.MAR.L.
Retrocopy NRNISWLQAEIEGLKGQRASLEAAIADAEQCENLDVTDAKANVDELNAALQ*AKQGMARQLR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1094 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1094 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000002186	1 retrocopy	retro_mmur_747,
Microcebus murinus	ENSMICG00000002190	1 retrocopy	retro_mmur_1094 ,
Nomascus leucogenys	ENSNLEG00000017748	2 retrocopies	retro_nleu_2823, retro_nleu_3100,
Tupaia belangeri	ENSTBEG00000000416	1 retrocopy	retro_tbel_1535,